Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g1005 ATGGAAGAAAGGGTAGGCCAAAATTCAGTTCCTCCTGCAGGTTCCATTGATAAGTATAAGATTCTGGATGTTAAACCTATGCGTAGTATGATACCGGTTTTCTCAATGTCTCCTCAAGCTCCAATCTCTGGTGAGTACCCTTCAGGGTTCAATCCATTTTTCCCATTTGGTGGACCTCAGCCAGCACCACCAAGGGTTGCTGCCACACCAGCTCCATTACGAGCTTATAGGGCTGGAGAAACCTCTGGTTTCGGCAGTTCGGGTACCAAGAAACATGGAGCATCATATTCAAAATCATCCAAAAAGAAGTATGTTGATAGAACTCCGGTGGTATATACTGATATGGGTTTTTTAGTTGGCATTACCCCACCTCTGAGAGAAGACGGTAATCGTGATGTGGTTAATCTTATACTCATGACATTTGATGCACTTCGTAGAAGGCTCTGCCAACTTGAAGATGCCAAGCAATTGAGCACTGGTATAATCAAGCGCGCGGATTTAAAAGCTTGCAATACTTTGATGAGCAAAGGGATTCGGACAAACCAGAGGAAGAGAGTAGGAGTAGTGCCTGGGGTTGAGGTTGGGGACATTTTCTTCTTCCGAATGGAATTATGTATTGTCGGTTTGCATGCTCAATCCATGGGTGGAATTGACTCCTTGCATATCAGAGGTGAGTTTGAGGAGGAAACTCTGGCAATAAGCATTGTTTCATCCGGAGAATATGATGATGAGGCGGAGGATAATGATGTTTTAATTTATACTGGTCAAGGTGAGAACTTCAACAAGAAAGACAAGCACCTGACAGATCAGAAGCTTCAAAGGGGTAATCTTGCTTTGGATAGAAGTTCGCGACAACATAATGAGGTAAGAGTCATCCGAGGTATAAAAGAGGGTGTGAATCAAACTTCAAAAATCTATGTCTATGATGGTTTGTATAAAATCGAAGATTCATGGGTGGATAGAGCAAAAAGCGGCGGCGGTGGTGTATTTAAATATAAGTTGGTGAGAATTCCTGGACAACCTAGTGGCTTTTCCGTTTGGAAATCAATTCGGAAGTGGAAGTCTGGCTTCCCTTCAAGGACTGGACTCATTCTTGCTGACCTCTCCTCAGGAGCTGAGAGTATTCCTGTATCACTTGTCAACGATGTTGATAATGAAAAGGCACCTGCTTATTTCACTTATTTCCAAACTCTTAGACATCCAAAATCATTCAATTTAATGCAGCCTTCGCACAGCTGCAACTGTGCTAAAGCATGTGCCCCTGGTGATTTGAACTGCTCTTGCATTAGAAAAACTGATGGTGATTTTCCATATATTGGCAATGGCATTCTTGTGAGTCGGAAGCAATTGGTTCATGAATGTGGCCCCGCATGTCAGTGTTCTCCTAACTGCAAAAATCGAGCATCACAGTCTGGTTTGAAGTACCACATGGAAGTGTTCAAAACAACGGATAGAGGTTGGGGTCTTCGATCACTGGATCCTATTCGTGCCGGATCTTTTATTTGTGAGTATGCAGGAGAAGTTATTGACAGGGTCAAGTTAAGTCAACTTGTGAGGGAAAGAGATGATGACTATGTTTTCGACACAACCCGAATTTTTGATACATTCAAGTGGAATTATGAGCCTAGGATACTAGAAGAAGTGAGTACAAACGACTCAAGTGAGGACTATGCTCTACCGTATCCTCTAATTGTAAATGCTAAGAGCGTCGGAAATGTGGCTAGATTCATAAATCATAGTTGCTCCCCAAATGTTTTCTGGCAACCTGTCTTATATGAAGAAAACAACCAATCCTTCCTACATGTTGCATTTTTTGCACTCAGGCACATTCCCCCGTTGACAGAGTTCAAATATGATTATGGAATTTCCGGTGCTGAGGGTAGCAGTGCGCAGAAAGGGGGGAGAAAGAAATGCTTTTGTGGATCACCAAAATGTCGTGGTTCTTTTGGTTGA 1953 0.427 MEERVGQNSVPPAGSIDKYKILDVKPMRSMIPVFSMSPQAPISGEYPSGFNPFFPFGGPQPAPPRVAATPAPLRAYRAGETSGFGSSGTKKHGASYSKSSKKKYVDRTPVVYTDMGFLVGITPPLREDGNRDVVNLILMTFDALRRRLCQLEDAKQLSTGIIKRADLKACNTLMSKGIRTNQRKRVGVVPGVEVGDIFFFRMELCIVGLHAQSMGGIDSLHIRGEFEEETLAISIVSSGEYDDEAEDNDVLIYTGQGENFNKKDKHLTDQKLQRGNLALDRSSRQHNEVRVIRGIKEGVNQTSKIYVYDGLYKIEDSWVDRAKSGGGGVFKYKLVRIPGQPSGFSVWKSIRKWKSGFPSRTGLILADLSSGAESIPVSLVNDVDNEKAPAYFTYFQTLRHPKSFNLMQPSHSCNCAKACAPGDLNCSCIRKTDGDFPYIGNGILVSRKQLVHECGPACQCSPNCKNRASQSGLKYHMEVFKTTDRGWGLRSLDPIRAGSFICEYAGEVIDRVKLSQLVRERDDDYVFDTTRIFDTFKWNYEPRILEEVSTNDSSEDYALPYPLIVNAKSVGNVARFINHSCSPNVFWQPVLYEENNQSFLHVAFFALRHIPPLTEFKYDYGISGAEGSSAQKGGRKKCFCGSPKCRGSFG* 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g1005 650 ProSiteProfiles Post-SET domain profile. 634 650 IPR003616 -
Lan4g1005 650 SMART preset_2 365 459 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lan4g1005 650 SUPERFAMILY SET domain 374 647 IPR046341 -
Lan4g1005 650 ProSiteProfiles Pre-SET domain profile. 411 472 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lan4g1005 650 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 650 IPR025794 GO:0016571
Lan4g1005 650 ProSiteProfiles SET domain profile. 475 621 IPR001214 GO:0005515
Lan4g1005 650 Pfam Pre-SET motif 369 467 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lan4g1005 650 ProSiteProfiles YDG domain profile. 187 336 IPR003105 -
Lan4g1005 650 MobiDBLite consensus disorder prediction 78 99 - -
Lan4g1005 650 Pfam SAD/SRA domain 186 340 IPR003105 -
Lan4g1005 650 SUPERFAMILY PUA domain-like 169 357 IPR015947 -
Lan4g1005 650 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH1 14 648 - -
Lan4g1005 650 SMART set_7 475 627 IPR001214 GO:0005515
Lan4g1005 650 Pfam SET domain 486 621 IPR001214 GO:0005515
Lan4g1005 650 SMART G9a_1 182 340 IPR003105 -
Lan4g1005 650 Gene3D - 169 356 IPR036987 -
Lan4g1005 650 Gene3D SET domain 358 649 IPR046341 -
Lan4g1005 650 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 14 648 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g1005 Lan-Chr4 14064624 14068314 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g1005 71 650 Su(var)3-9 homologs AT5G04940 57.363 0.0 687
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lan4g1005 SAD_SRA 5.6e-46 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g1005 K24405 - gmx:100812173 971.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g1005 4 14064624 14068314 Lan16g0805 16 14211772 14214379 LSH