Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0999 ATGAAAACACAACACAGAAGTTCCAAGTCTATGTATCAACAGAGTTTTGATTCTTTGCTTTACGACCACACTAACAACAAATCCGATTCCAAACACTTCGATCTACAACCTTCTCCGTTCAACTTCCCGACCTCCTCCACCACCATCTCCACCGCCGCACCACCAACCCACAACTCCAAACCCCGCCACCGGAGATCAGTCTCCGCCGGAGCCCCATTAATCTACTCCGGCGGAGCTTCCACCATATCAACTCCCACTCCGGCCGGAAAAACCCTCAAACCGGGTTTACCCTCTCGTGGGTCGACCCGAACCGACGTGTTGGGTTCCGGTACGGTGAACTACGGCCGCGGCAGCATAATGCGCGGTGGTTCAAAGTTAAGCATTAATAGTAACAGTAATAGTAACAGTGGTGATGATAATCCAGTGGGTGCGTGTGTATCGATGGTGAAGCAGCGTGCAATGATTGGTTGTTCTGATCCTGAAGAGGTGAAGAGAGTTGGGAATGAGTTATATAAGAATGGGAATTTTGCAGCGGCGTTGGTATTGTATGATCGTGCTGTTTCAATGTCGCCGGGGAATGCTGCTTACCGGAGTAACCGGGCAGCGGCATTTACGGCTTTAGGAAGGTTAGGAGAGGCGGTTAGGGAGTGTGATGAGGCTGTTAAGTTGGATCATTCTTATGCAAGGGCTCATATGAGGCTTGTTTCTCTTTATATGCGCTTTGGGCAGGTTGAGAACTCGCGGCGACATCTCTTTCTTTCCGGGCTGCAGGAGGATCAATCTGAAGAGCAGAAGCTGAGGTTATTGGAGAATCATCTGAACCAATGTGAAGATGCACGGAAGGTTGGTGATTGGAAGAGAGCACTTAGGGAATCAGAGGCAGCCATTGCAGTGGGAGCAGATTTTTCACCTCAGCTTGTTGCTTGTAAAGCAGAAGCTTATTTAAAACTCCGTCGGTTTGATGATGCTGAATCATGTCTGTCAAACATTCCCAAGTTGGAAGGCTGTCCTCCAGCCTGCACACAAACCAAGTTTTTTGGTATGATCGGTGACGCTTATGTGCCTTTTGTTGTTGCACAGATTGAGATGGCATTGGGAAGGTTTGACAATGCTGTCACAGCAGCAGAAAAGGCTAGCATGTTAGATTACAGTAATATTGAAGTTGCTAAGATTGTAAATACCGTTAGAATGGTGGCAAGAGCTCGTTCCAGGGGCAACGATCTTTTCAGTTCCTGCAAATTTTCTGACGCTTGTTTTGCTTATGGAGAAGGCCTCAAATATGACAATGCCAACTATGTTCTATTTTGCAATAGAGCTATTTGTTGGTCTAAACTTGGGCTATGGGAACAATCTGTTCAAGATTGCAACCAAGCTCTCAATATTCAACCAAATTACGCCAAGGCCCTATTCCGCAGGGCTGCATCAAATACGAAGCTTGAAAGATGGGCCGAAGTTGTTAAAGATTACGAGGCTTTGAAACGCGAACTCCCTCATGACAATGAAGTTGCTGAATCCCTTGGTCAGGCTCGACTTGCATTGGAAAAATCTCGCGGAGTGGTATATGGTACCAAATTCGGAGTTGAAGTTGAAGAAATCTCTGTACTAGATAAATTTAAAGCTGCTATTGGCTCTGCTGGTGTTTCTGTAGTTTATTTCAAAGAGGCATGGAATAAAGTATGTGAAGAAATATATCCATTCATAAATACATTGTGTGTTAGATATCCTTCTGTCAAATTTATCAAGGTGGACGTGGAAGAGTGTCTAGCAATAGCAAAAGCTGAAAGCATAAGAAGTGTTCCAACTTTTAAAATTTATAAAAATGGTGAGAAGGTAAAAGAGATGATTTGTCCTACCCATCAGTTCCTAGAGGACTCACTGAAGAAAAGTATTAGCTTCTAG 1899 0.4481 MKTQHRSSKSMYQQSFDSLLYDHTNNKSDSKHFDLQPSPFNFPTSSTTISTAAPPTHNSKPRHRRSVSAGAPLIYSGGASTISTPTPAGKTLKPGLPSRGSTRTDVLGSGTVNYGRGSIMRGGSKLSINSNSNSNSGDDNPVGACVSMVKQRAMIGCSDPEEVKRVGNELYKNGNFAAALVLYDRAVSMSPGNAAYRSNRAAAFTALGRLGEAVRECDEAVKLDHSYARAHMRLVSLYMRFGQVENSRRHLFLSGLQEDQSEEQKLRLLENHLNQCEDARKVGDWKRALRESEAAIAVGADFSPQLVACKAEAYLKLRRFDDAESCLSNIPKLEGCPPACTQTKFFGMIGDAYVPFVVAQIEMALGRFDNAVTAAEKASMLDYSNIEVAKIVNTVRMVARARSRGNDLFSSCKFSDACFAYGEGLKYDNANYVLFCNRAICWSKLGLWEQSVQDCNQALNIQPNYAKALFRRAASNTKLERWAEVVKDYEALKRELPHDNEVAESLGQARLALEKSRGVVYGTKFGVEVEEISVLDKFKAAIGSAGVSVVYFKEAWNKVCEEIYPFINTLCVRYPSVKFIKVDVEECLAIAKAESIRSVPTFKIYKNGEKVKEMICPTHQFLEDSLKKSISF* 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0999 632 Pfam Thioredoxin 536 618 IPR013766 -
Lan4g0999 632 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 20 628 IPR044534 -
Lan4g0999 632 MobiDBLite consensus disorder prediction 31 57 - -
Lan4g0999 632 Gene3D Glutaredoxin 520 631 - -
Lan4g0999 632 CDD TRX_family 538 623 - -
Lan4g0999 632 Pfam Tetratricopeptide repeat 170 231 - -
Lan4g0999 632 SUPERFAMILY TPR-like 159 386 IPR011990 GO:0005515
Lan4g0999 632 MobiDBLite consensus disorder prediction 78 113 - -
Lan4g0999 632 SUPERFAMILY Thioredoxin-like 441 628 IPR036249 -
Lan4g0999 632 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN TTL4 20 628 - -
Lan4g0999 632 Gene3D Tetratricopeptide repeat domain 158 518 IPR011990 GO:0005515
Lan4g0999 632 SMART tpr_5 432 465 IPR019734 GO:0005515
Lan4g0999 632 SMART tpr_5 466 499 IPR019734 GO:0005515
Lan4g0999 632 SMART tpr_5 194 227 IPR019734 GO:0005515
Lan4g0999 632 SMART tpr_5 398 431 IPR019734 GO:0005515
Lan4g0999 632 SMART tpr_5 352 385 IPR019734 GO:0005515
Lan4g0999 632 SMART tpr_5 160 193 IPR019734 GO:0005515
Lan4g0999 632 ProSiteProfiles TPR repeat profile. 160 193 IPR019734 GO:0005515
Lan4g0999 632 MobiDBLite consensus disorder prediction 30 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0999 Lan-Chr4 13847350 13850754 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0999 161 234 U-box Gene Family AT3G07370 32.432 6.40e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0999 - - gmx:100783860 882.093