Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0988 ATGGCTTTCAAGAACTTAACCATTCTTGCTTTGCATGTTTCACTTCTACTTTCTTTCATGCCATCCTTATCCATAGCAAATAACTATGCAGCATCAATTGTTTCACCACAAACTATTTGCAACTATACTTTATACCCTTCTTATTGCCAAACTGTGCTTGCTAATCAAAATGGCACCACATTTGACTATTGCAACATTTCCATCAGAAAATCTTTGTCACAGTCACGTAACTTCTTGAACTTAGTCTATTCTTATTATAAAGGTTTCTCATCTTTCTCTCAAATCACAGTTCGTGCTCTTGAAGATTGTCAATTCCTCTCTGAACTTAATTTTGAATACTTATCAAACACTTATGATGTGATTGAAAAATCTAGCAATGTTCTTACCACATCTCAAGTTGAAGATTTTCACACATTTCTTAGTGCTACTTTGACAAATCAACAAACTTGTTTAGATAGCCTAGAAACCTCAACTTCAGACCCAAGAGTGAAAAATGATCTTTATTCCTCTCTCTATAATGATATGAAGCTTAACAGTGTATCCCTTGCATTATTCAAAGAGGCTTGGGTTCCTGAGAATAAAAACTCAACATCATCGGAAAACCATACAAGTCAATCAAATTTCCAAAACCAAGTACGTGCCATCTATGATTCTTCAAAAGGCAATGGGAGAAAACTACTTCAAACAATGGATGATAATGAAAGTATAGTAGTAAAGGATATTGTAGTTGTTAGTAAAGATGGAAGTGGAAACTTCACAACTATCAATGATGCCATAGATGCTGCACCAAATAACACAGTTGCTAGTGATGGTTACTTCATCATTTTTATCACTGAAGGAGTATATCAAGAGTATGTATCTATTGCCAAAAACAAAAAGTTCTTGATGCTGATTGGAGATGGAATCAATCAGACTATTATTACTGGTGATCACAATGTCGTGGATGGTTTTACAACTTTCAACTCAGCAACATTTGCTGTGGTAGCACAAGGGTTTGTAGCAGTTAACATAACATTTCGCAACACTGCTGGACCAAGCAAACACCAAGCAGTTGCAGTAAGAAATGGAGCAGATATGTCCACATTCTATAGTTGCAGCTTTGAAGGGTATCAAGACACTTTATACACACATTCATTGAGACAATTCTATCGTGAATGTGACATATATGGAACAGTTGATTTCATATTTGGAAATGCAGCAGTTGTTTTTCAAAGTTGTAACTTTTATCCTCGTCTTCCAATGAGTCAACAATTCAATGCTATCACTGCTCAAGGTCGTAGTGATCCAAATCAAAACACTGGTATTTCAATACAAAATGGAATAATAAAAGCTGATAATGATTTGGCTCCAATGGTTAGTAGTGTGAAAACATACCTTGGAAGGCCATGGAAGGAGTACTCAAGAACAGTGTATATGGAATGTTTCATGGATAATTTGATAGCTCCTGAAGGATGGCATGAATGGAATGGAGATTTTGCACTAAACACTTCATACTATGCAGAATATAATAACATGGGACCTGGTTCAAATACTCAAAATCGTGTAACATGGTTGGGATATCATGTTATCAATGCTAATGATGCACTTAATTTTACTGTCTCTACCTTCTTGGATGGAGATTTTTGGTTGCCTCAAACTAGTGTTCCTTTTCAGGTGTCTATATAA 1665 0.355 MAFKNLTILALHVSLLLSFMPSLSIANNYAASIVSPQTICNYTLYPSYCQTVLANQNGTTFDYCNISIRKSLSQSRNFLNLVYSYYKGFSSFSQITVRALEDCQFLSELNFEYLSNTYDVIEKSSNVLTTSQVEDFHTFLSATLTNQQTCLDSLETSTSDPRVKNDLYSSLYNDMKLNSVSLALFKEAWVPENKNSTSSENHTSQSNFQNQVRAIYDSSKGNGRKLLQTMDDNESIVVKDIVVVSKDGSGNFTTINDAIDAAPNNTVASDGYFIIFITEGVYQEYVSIAKNKKFLMLIGDGINQTIITGDHNVVDGFTTFNSATFAVVAQGFVAVNITFRNTAGPSKHQAVAVRNGADMSTFYSCSFEGYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVFQSCNFYPRLPMSQQFNAITAQGRSDPNQNTGISIQNGIIKADNDLAPMVSSVKTYLGRPWKEYSRTVYMECFMDNLIAPEGWHEWNGDFALNTSYYAEYNNMGPGSNTQNRVTWLGYHVINANDALNFTVSTFLDGDFWLPQTSVPFQVSI* 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0988 554 ProSitePatterns Pectinesterase signature 2. 388 397 IPR033131 -
Lan4g0988 554 Gene3D - 236 554 IPR012334 -
Lan4g0988 554 SUPERFAMILY Pectin lyase-like 237 551 IPR011050 -
Lan4g0988 554 PANTHER PECTINESTERASE 20 552 - -
Lan4g0988 554 SMART PMEI_2 31 184 IPR006501 GO:0004857
Lan4g0988 554 Pfam Plant invertase/pectin methylesterase inhibitor 37 184 IPR006501 GO:0004857
Lan4g0988 554 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 20 552 - -
Lan4g0988 554 Gene3D Invertase/pectin methylesterase inhibitor family protein 36 187 IPR035513 -
Lan4g0988 554 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 37 186 IPR035513 -
Lan4g0988 554 Pfam Pectinesterase 242 540 IPR000070 GO:0030599|GO:0042545
Lan4g0988 554 CDD PMEI-like_3 38 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0988 Lan-Chr4 13672729 13674641 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0988 38 550 Carbohydrate Esterase AT1G02810 56.124 0.0 599
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0988 K01051 - gmx:100792847 848.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0988 4 13672729 13674641 Lan16g0925 16 16234498 16236774 LSH
Lan4g0988 4 13672729 13674641 Lan20g0513 20 3789346 3794149 PCT
Lan4g0988 4 13672729 13674641 Lan4g1389 4 22970751 22975825 PCT