Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0978 ATGCCCTCAGCTCAGGATCCATTCTACGTTGTTAAGGCTGAGATTCAAGAATCTATTGATAAGTTGCAATCGACTTTTCGCCAATGGGAAAACGCTCTGGATGCTGGGGAGCGAGTTCATTTATCGAAGGAGGTCCTTGCTGGATGCGAAAGCATAGAGTGGCAGGTGGATGAATTGGACAAAGCAATTGCTGTAGCATCTCAAGATCCGTCTTGGTATGACATTGATGAAGTGGAGCTTCAAAGCCGGAGGAGGTGGACAAGCAGTGCCCGGACTCAGGTAGGCACTGTGAAGAAAGCTGTGGAAGCTGGAAAGGGCTCAGGCACAGGAAGCCATGCTAGTGTAAATGCAATGCACCAAGAACTAATGAGGCTACCTAATTCACGTGAAACTGATACATACAACCAATATGCTGCCCAAGATAATGATGATTTCATACAATCCGAATCAGATAGACAGATGCTTCTTATAAAGAGACAGGATGAGGAGTTGGACGAGCTTAGTTTAAGTGTGCAAAGAATTGGAGGAGTTGGACTTACAATACACGAAGAGCTAATTGGACAGGAAAGAATTATAGATGAGCTGGGCTCTGAGATGGACAGTACATCAAATCGTCTAGATTTTGTCCAAAAAAAAGTAGCAATGGTTATGAAAAAGGCTAGTGCGAAGGGCCAGATCATGATGATATTGGGTTTGTTCGCCTTGTTCATTTTCCTCTTTATCTTGGTATTTTTCACCTAG 741 0.4372 MPSAQDPFYVVKAEIQESIDKLQSTFRQWENALDAGERVHLSKEVLAGCESIEWQVDELDKAIAVASQDPSWYDIDEVELQSRRRWTSSARTQVGTVKKAVEAGKGSGTGSHASVNAMHQELMRLPNSRETDTYNQYAAQDNDDFIQSESDRQMLLIKRQDEELDELSLSVQRIGGVGLTIHEELIGQERIIDELGSEMDSTSNRLDFVQKKVAMVMKKASAKGQIMMILGLFALFIFLFILVFFT* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0978 246 SUPERFAMILY SNARE fusion complex 152 216 - -
Lan4g0978 246 PANTHER SYNTAXIN 1 245 IPR045242 -
Lan4g0978 246 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 154 216 IPR000727 -
Lan4g0978 246 Coils Coil 12 32 - -
Lan4g0978 246 SMART tSNARE_6 149 216 IPR000727 -
Lan4g0978 246 Gene3D - 161 225 - -
Lan4g0978 246 SUPERFAMILY t-snare proteins 5 101 IPR010989 GO:0016020|GO:0016192
Lan4g0978 246 PANTHER SYNTAXIN PROTEIN 1 245 - -
Lan4g0978 246 Coils Coil 192 212 - -
Lan4g0978 246 Pfam Syntaxin 6, N-terminal 6 98 IPR015260 GO:0016020|GO:0048193
Lan4g0978 246 Pfam SNARE domain 191 242 IPR000727 -
Lan4g0978 246 Gene3D - 2 104 - -
Lan4g0978 246 CDD SNARE_Qc 157 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0978 Lan-Chr4 13278766 13282694 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0978 55 246 SNARE and Associated Proteins AT1G28490 70.312 7.11e-94 272
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0978 K08500 - gmx:100787129 366.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0978 4 13278766 13282694 Lan2g1309 2 23968710 23972407 LSH
Lan4g0978 4 13278766 13282694 Lan2g1309 2 23968710 23972407 PCT
Lan2g1309 2 23968710 23972407 Lan4g0978 4 13278766 13282694 PCT