Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0972 ATGGATTCGTTTGAGCCAGATGGAAATGGCAACGGCAATGGTAACGGCAATGGCAGTGAGGAGTCTTTGCCCCCACCCCCTCCCATTGTCCCACCAGATGTTGTACCTGTCAAAGCAGAAGATGTCCTTCCTGTTCCTGCTGAACCTGTTAAGAAAAAGGCTTCCCGATTTCCGATAGCCAGACGCGGTCTGGGATCAAAAGGAATGAAGATATCTCTTCAAACCAATCATTTCAAAGTTAATGTCAATACCAATGATGGATATTTCTTCCATTATAGCGTGGCTTTTTCTTATGAAGATGGACGCCCTGTTGAAGGTAAGGGCGTAGGGCGAAAGATAATGGATCGGGTGCAGGAGACATATGATTCAGAGTTAAATGGTAAGGACTTTGCGTATGATGGGGAGAAAAGCCTGTTTACCATCGGATCTCTACCGCGAAACAAACTCGAGTTTGAAGTTGTTCTGGAGGATGTGACATCCAACAGGAATAATAATGGCAATTGTAGCCCTGATGGTCATGGGGACAATGACAGTGACAAAAAGAGAATTCGGCGCCCATATCGTGCAAAGACATTCAAGGTAGAGCTTAGCTATGCTGCGAAAATCCCAATGCAGGCCATTGCCAATGCCTTACGAGGGCAGGAGTCGGAGAACTTCCAAGAAGCCATTAGAGTGCTTGATATTGTATTGAGGCAACATGCGGCAAAGCAAGGTTGCCTACTTGTCCGTCAATCATTCTTCCACAATGATCCGAATAATTTTGCTGATGTGGGAGGTGGCGTTCTTGGCTGCCGAGGATTCCATTCAAGCTTTAGAACTACACAGAGTGGCCTGTCTCTTAACATAGATGTTTCCACTACCATGATAATTCAACCGGGACCTGTTGTGGACTTCCTAATTGCCAATCAAAATGTCAGAGACCCATTTCAAATTGACTGGGCAAAGGCCAAAAGGACACTGAAAAATCTGAGGATTAAAGTTAGCCCATCCAATCAAGAGTACAAAATTAATGGGCTCAGCGAACTTCCATGCAGAGAGCAGACTTTTACTCTGAAGAACAGGGGCGGAAGAGATGGTGAAGAAAGTACTGAGGAAGTGACTGTTTATGATTATTTTGTTAATAATCGCAATATAAATCTCCGTTACTCTGCTGAGCTTCCATGTCTCAATGTTGGCAAGCCTAAAAGGCCAACATATCTCCCCATTGAGCTTTGTGAGTTGGTGTCTTTGCAACGTTATACAAAAGCTCTGTCCACGCTTCAACGGGCTTCACTGGTAGAGAAGTCCAGGCAGAAGCCACATGAGAGGATGAAGATTTTGTCTGCTGCGCTTAAAACCAGCAACTATGGTTCTGAACCTCTGCTTCGTAATTGTGGAGTTTCTATAAGCACTGGCTTTACTGAAGTGGAGGGTCGTGTTTTGCCAGCTCCAAGGTTGAAATTTGGCAATGGTGAGGATCTGAATCCAAGGAATGGCAGATGGAATGTTAGTACCAAGAAATTTGTGCAACCAACAAAGATAGAACGATGGGCTGTGGCTAACTTTTCTGCACGGTGTGATGTAAGAGGACTTGTGAGGGATCTGATTAGAATTGGAGAAATGAAAGGAATTGCGATAGATGCCCCATTTGATGTGTTTGAAGAGAATGCTCAGTTTCGCCGTGCCCCACCTATGGTTAGAGTGGAGAAAATGTTCGAGAGCATCCAGTCAAAACTTCCTGGGGCTCCCCAGTTCCTTCTCTGTCTGCTTCCTGATCGGAAAAACTGTGAAATTTATGGTCCATGGAAAAAGAAGAATCTTGCTGATTATGGTATCGTTAATCAGTGCATGTGTCCTACTAGGGTGAATGATCAATTTCTGACTAATGTTATGTTGAAGATCAATGCCAAGCTTGGTGGGTTGAATTCATTGTTATGCGTCGAACACACTCCTTCTCTTCCCATTGTTTCAAAAGCACCCACCCTCATTCTAGGCATGGACGTATCACACGGCTCACCAGGACAGTCTGATATTCCGTCAATTGCAGCAGTTGTCAGCTCTAGACAGTGGCCTCTGATCTCAAAGTATAGAGCATGTGTACGTACCCAGTCTGCAAAAGCAGAAATGATAGATAACTTGTTCAAGAAAGTATCGGAAAAGGAGGATGAAGGCATCATGAGGGAACTCTTGCTTGATTTCTATGTAACTTCTGGGAAGAGAAAACCAGATAACATAATCATATTCAGGGATGGTGTCAGTGAATCACAGTTCAATCAAGTTTTGAACATTGAACTTGATCAAATCATTGAGGCGTGTAAGTTTCTTGATGATAAGTGGAACCCCAAGTTTTTGGTAATTGTTGCTCAGAAGAATCACCACACAAGATTCTTCCAGCCAGGCTCTCCTGACAATGTTCCCCCTGGAACTGTTATTGACAATAAAATTTGTCATCCAAGAAATTATGATTTCTACCTATGTGCACATGCTGGAATGATAGGTACCAGTAGGCCTACACATTACCATGTTTTGCTTGATGAGATTGGTTTCTCTCCTGATGAGCTGCAAGAGCTTGTCCATTCTCTATCATATGTCTATCAGAGGAGTACTACTGCCATATCTGTTGTTGCGCCGATATGCTATGCACACTTGGCTGCTACTCAGTTAGGGCAGTTTATGAAATTTGAAGATAAATCTGAGACATCTTCAAGCCATGGTGGACTGACTGCTGCTGGAGCTGTCCCTGTTCCTCAGCTGCCCAAATTGCAGGAGAATGTCGCCAACTCGATGTTCTTTTGCTGA 2778 0.4392 MDSFEPDGNGNGNGNGNGSEESLPPPPPIVPPDVVPVKAEDVLPVPAEPVKKKASRFPIARRGLGSKGMKISLQTNHFKVNVNTNDGYFFHYSVAFSYEDGRPVEGKGVGRKIMDRVQETYDSELNGKDFAYDGEKSLFTIGSLPRNKLEFEVVLEDVTSNRNNNGNCSPDGHGDNDSDKKRIRRPYRAKTFKVELSYAAKIPMQAIANALRGQESENFQEAIRVLDIVLRQHAAKQGCLLVRQSFFHNDPNNFADVGGGVLGCRGFHSSFRTTQSGLSLNIDVSTTMIIQPGPVVDFLIANQNVRDPFQIDWAKAKRTLKNLRIKVSPSNQEYKINGLSELPCREQTFTLKNRGGRDGEESTEEVTVYDYFVNNRNINLRYSAELPCLNVGKPKRPTYLPIELCELVSLQRYTKALSTLQRASLVEKSRQKPHERMKILSAALKTSNYGSEPLLRNCGVSISTGFTEVEGRVLPAPRLKFGNGEDLNPRNGRWNVSTKKFVQPTKIERWAVANFSARCDVRGLVRDLIRIGEMKGIAIDAPFDVFEENAQFRRAPPMVRVEKMFESIQSKLPGAPQFLLCLLPDRKNCEIYGPWKKKNLADYGIVNQCMCPTRVNDQFLTNVMLKINAKLGGLNSLLCVEHTPSLPIVSKAPTLILGMDVSHGSPGQSDIPSIAAVVSSRQWPLISKYRACVRTQSAKAEMIDNLFKKVSEKEDEGIMRELLLDFYVTSGKRKPDNIIIFRDGVSESQFNQVLNIELDQIIEACKFLDDKWNPKFLVIVAQKNHHTRFFQPGSPDNVPPGTVIDNKICHPRNYDFYLCAHAGMIGTSRPTHYHVLLDEIGFSPDELQELVHSLSYVYQRSTTAISVVAPICYAHLAATQLGQFMKFEDKSETSSSHGGLTAAGAVPVPQLPKLQENVANSMFFC* 926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0972 925 CDD PAZ_argonaute_like 292 408 - -
Lan4g0972 925 ProSiteProfiles PAZ domain profile. 334 409 IPR003100 GO:0005515
Lan4g0972 925 MobiDBLite consensus disorder prediction 162 184 - -
Lan4g0972 925 SUPERFAMILY Ribonuclease H-like 562 884 IPR012337 -
Lan4g0972 925 MobiDBLite consensus disorder prediction 1 20 - -
Lan4g0972 925 Pfam Piwi domain 579 886 IPR003165 GO:0003676
Lan4g0972 925 Pfam Argonaute linker 1 domain 242 290 IPR014811 -
Lan4g0972 925 Pfam N-terminal domain of argonaute 70 230 IPR032474 -
Lan4g0972 925 CDD Piwi_ago-like 453 880 IPR045246 -
Lan4g0972 925 ProSiteProfiles Piwi domain profile. 578 886 IPR003165 GO:0003676
Lan4g0972 925 Pfam Argonaute linker 2 domain 435 481 IPR032472 -
Lan4g0972 925 Pfam Mid domain of argonaute 488 540 IPR032473 -
Lan4g0972 925 Gene3D paz domain 286 413 - -
Lan4g0972 925 Pfam PAZ domain 296 425 IPR003100 GO:0005515
Lan4g0972 925 Gene3D - 473 639 - -
Lan4g0972 925 SMART Piwi_a_2 578 886 IPR003165 GO:0003676
Lan4g0972 925 Gene3D - 645 925 IPR036397 GO:0003676
Lan4g0972 925 PANTHER TRANSLATION INITIATION FACTOR 2C, PUTATIVE-RELATED 2 924 - -
Lan4g0972 925 SMART DUF1785_2 240 292 IPR014811 -
Lan4g0972 925 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 2 924 - -
Lan4g0972 925 MobiDBLite consensus disorder prediction 1 34 - -
Lan4g0972 925 SUPERFAMILY PAZ domain 287 449 IPR036085 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0972 Lan-Chr4 12701085 12709688 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0972 39 925 Eukaryotic Initiation Factors Gene Family AT1G48410 35.426 9.82e-169 518
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0972 K11593 - gmx:100820376 1642.86