Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0952 ATGGGAAGAGCTCCTTGTTGTGAGAAAGTGGGGTTGAAGAAAGGGAGATGGACAGCAGAGGAAGATGAAATCTTGACAAAGTATATTCAAGCCAATGGTGAAGGCTCTTGGAGGTCATTGCCCAAAAATGCGGGATTACTGAGATGTGGTAAGAGCTGCAGATTAAGATGGATAAACTATTTAAGAACTGATCTAAAAAGAGGCAACATTTCTGTTGAAGAGGAAAGTCTCATTAGTAAGTTGCATGCTTCTTTTGGAAACAGGTGGTCATTGATAGCTGGTCATTTGCCCGGTAGAACAGATAACGAGATAAAAAACTATTGGAATTCTCATTTGAGTAGAAAGATATTTAGCTATAATTATACTACAAGTACTAAACATGATGCCACCACCATGATCGAGCCTCAGATAATAGCTTTCCCTCCCAAGCGAAGAGGTGGTAGAACTAGCCGATGGGCTATGAAGAAGAACAAAACCTATGCCCTAAAAACAAAGCTTAATAATCATCAACAAAGTCCAAAACAAGTTCAAATTCATCAGAATAATGATGCAGTTCCTCTACCACCTACTCCATCACTTGAAAGTGAGAACTTGACAATGATAATGGATTTCATGGCTTTGGACCCGGAGAGAGAAGAAGAAGAAGAAGAAGTAGGTGATGGGTTAGGTAAAAGTTCCTCTCAACAAGAAGAAAACACAAGAGGTACATTGGTTCAAGAGGATCAGTACTTTGCAGTGGAGGAAGGTGAAAGAATAAATGAGATGTTTTGCATTGAGGGTTGGAAAGAAAAAAGTGATTATGAGATTTTGGGACAGTACCAAGAAGTAATTAATGGTTGTTGGGAGTTGAATTTTAATGAGTTCATGGACACTTGTTTTGTGGAACAAGAAAGTGGGGTTTTGTCGTTGACATTTGGTGAAGAAATTCTAGAAAGTAATAATAATAGTGATAATAATAGTAATAATAATAATAATGAAGAAGAAGTGGTGGGAAATGGTGCAACAAGAAATGAACCAACATGTACAACTAACCAATGCTCAAATGGGGAGTGTAGAGATTTATGTTCTTCTATGGCTTTGAGTTTAGATCATGGTAATAATAATAATAGTGACTTGGATTTTGAGAGTGTCATACAATTCAATGGTAATATGGTGTCAAAGTCATTGGAGGATAAAGAAAACTTGTTGTCATGGCTATGGGAAGATGATGATGGTTGGGGAAAGGATTGTGATCAATTTGGAGATATTGATTCTCAACTGGATGTAATGGTTGCTTGGTTTAGTTGA 1287 0.373 MGRAPCCEKVGLKKGRWTAEEDEILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRTDLKRGNISVEEESLISKLHASFGNRWSLIAGHLPGRTDNEIKNYWNSHLSRKIFSYNYTTSTKHDATTMIEPQIIAFPPKRRGGRTSRWAMKKNKTYALKTKLNNHQQSPKQVQIHQNNDAVPLPPTPSLESENLTMIMDFMALDPEREEEEEEVGDGLGKSSSQQEENTRGTLVQEDQYFAVEEGERINEMFCIEGWKEKSDYEILGQYQEVINGCWELNFNEFMDTCFVEQESGVLSLTFGEEILESNNNSDNNSNNNNNEEEVVGNGATRNEPTCTTNQCSNGECRDLCSSMALSLDHGNNNNSDLDFESVIQFNGNMVSKSLEDKENLLSWLWEDDDGWGKDCDQFGDIDSQLDVMVAWFS* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0952 428 MobiDBLite consensus disorder prediction 170 192 - -
Lan4g0952 428 MobiDBLite consensus disorder prediction 210 239 - -
Lan4g0952 428 MobiDBLite consensus disorder prediction 312 337 - -
Lan4g0952 428 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 405 - -
Lan4g0952 428 SMART sant 13 63 IPR001005 -
Lan4g0952 428 SMART sant 66 114 IPR001005 -
Lan4g0952 428 CDD SANT 16 61 IPR001005 -
Lan4g0952 428 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lan4g0952 428 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lan4g0952 428 Gene3D - 11 67 - -
Lan4g0952 428 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lan4g0952 428 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lan4g0952 428 CDD SANT 71 112 IPR001005 -
Lan4g0952 428 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Lan4g0952 428 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lan4g0952 428 Gene3D - 71 134 - -
Lan4g0952 428 PANTHER MYB TRANSCRIPTION FACTOR 2 405 - -
Lan4g0952 428 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lan4g0952 428 MobiDBLite consensus disorder prediction 222 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0952 Lan-Chr4 12011525 12014938 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0952 1 155 MYB Transcription Factor Family AT2G47460 72.327 1.31e-77 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan4g0952 Myb_DNA-binding 2.3e-12 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0952 4 12011525 12014938 Lan20g0530 20 3959763 3962811 PCT
Lan4g0952 4 12011525 12014938 Lan4g1375 4 22808467 22811068 PCT
Lan20g0530 20 3959763 3962811 Lan4g0952 4 12011525 12014938 PCT
Lan4g1375 4 22808467 22811068 Lan4g0952 4 12011525 12014938 PCT