Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0948 ATGGCACAGGTTGTTTTAGTAGTTGATGATTTGAAATATATTGGTGGGATTTTTCGCTGTAGAATATGTCATGAAGAAGAAGATTTTGAGAACTCCACAAGCATGGAAGCACCTTGTTCTTGTTCTGGAACCATTAAGTTTGCTCATAGAGATTGTATACAAAGATGGTGCAATGAGAAAGGAAATACAATCTGTGAAATATGTCTCCAGGAATATGGACCTGGATATACGGCACCTGTAAAGAAATATGACGAAAATGATGAAGCAATGTCTATTGGGGAGGAAGAAGAGTTAAACACAAGAATAGAGGAAATGGAGGAAGGAGTTACATTAGACTCTGAATGTACCTTTGTTGCTGACACAAACCCTTCTCATCTCCGATTACTAGCATTTACTATTATAATCGTCTTGCTTTTAAGACATTTTTTAGCAGTGTGTACAAATGGAACAGAAGATTACCCATTTACAACGTTTACTGTTGTTATACTAAAGGCTAGTGGAGTTATTATACCCATGTATTTAATTATTAGGATAGTAGGAGCCATTCAGAACAGTATCCAGCATCACCATCAGGATTATAACTATCACACATCAATTGCTGATGGAGATGAAGAAAACCATTTATCATATGATTAA 636 0.3569 MAQVVLVVDDLKYIGGIFRCRICHEEEDFENSTSMEAPCSCSGTIKFAHRDCIQRWCNEKGNTICEICLQEYGPGYTAPVKKYDENDEAMSIGEEEELNTRIEEMEEGVTLDSECTFVADTNPSHLRLLAFTIIIVLLLRHFLAVCTNGTEDYPFTTFTVVILKASGVIIPMYLIIRIVGAIQNSIQHHHQDYNYHTSIADGDEENHLSYD* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0948 211 Pfam RING-variant domain 20 68 IPR011016 GO:0008270
Lan4g0948 211 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 200 IPR033275 -
Lan4g0948 211 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 1 200 - -
Lan4g0948 211 CDD RING_CH-C4HC3_MARCH 20 68 - -
Lan4g0948 211 SUPERFAMILY RING/U-box 19 72 - -
Lan4g0948 211 Pfam Protein of unknown function (DUF3675) 74 178 IPR022143 -
Lan4g0948 211 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 77 IPR013083 -
Lan4g0948 211 SMART ringv_2 19 69 IPR011016 GO:0008270
Lan4g0948 211 ProSiteProfiles Zinc finger RING-CH-type profile. 12 75 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0948 Lan-Chr4 11886844 11889460 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0948 20 68 C3H Transcription Factor Family AT5G05830 40.385 1.50e-07 48.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0948 4 11886844 11889460 Lan8g0404 8 6207036 6209824 PCT
Lan4g0948 4 11886844 11889460 Lan20g0538 20 4043302 4045996 PCT
Lan8g0404 8 6207036 6209824 Lan4g0948 4 11886844 11889460 PCT
Lan20g0538 20 4043302 4045996 Lan4g0948 4 11886844 11889460 PCT