Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0943 ATGGATGATTGTTGTGCCGTTTGCGCTGAGCCCATGGAATGGGTTGCGTACGGACCCTGTTTGCACCGCGATGTGTGTTCCACTTGCGTTGCTCGCCTCCGTTTCATTTGCGACGATCGCCATTGTTGCATTTGCAAGACCGATTGCAACGTCGTTTTCGTTACCAAGGCTCTAGGAGATTATACAAGGATGATTAATGACTTTTCAGCCCTTCCATCTACCATAAGAGAGGGCAAGGCTGGATCATATTGGTACCATGAGGATACAAATGCTTATTTTGATGATATGGACCATTACAAGATGATCAAGGCTATGTGCAGGCTTTCATGCAGTGTATGTGATAATATAGAGGAGCAACCACATGATGCTTCAAGGCGACGTGAAAGGTTTAGAAATATAGGTCAGCTGAAAGGCCACTTATTCCACCGTCATAAGTTGCATATGTGCAGTTTATGTTTGGAGGGAAGGAAGGTATTTATATGTGAGCAAAAACTATATACTAGGGCCCAGTTGAATCAACACATAAACACAGGTGACTCTCTGGTGGATGGCAGCGAGAGTGAGAGAGGTGGTTTTATGGGACATCCTATGTGTGAATTCTGCAGAACCCCATTTTACGGGGACAATGAACTATACACACATATGTCTACAGAACATTACACATGTCATATATGTCAAAGGCAGCATCCTGGACAGTATGAATACTATAAGAACTATGATGATCTAGAGATCCATTTCCGTCAACAGCACTTCTTATGTGAAGATGAGGCTTGCCTTGCCAAGAAGTTTATTGTCTTTCAATCTGAAGGAGAGATGAAGAGGCATAATACTACCGAACATGGAGGGCGTATGTCACGGTCAAAGCGTAATGCTGCTCTTCAGATACCGACTAGCTTTCGGTACAGACATGGTAATGAACAAAACCAACAACGTCGTGGAAGAGCTCGCACATTTTCTCGTGATATATCTGAAAATCAACTTTCTATGGCCATTGAAGCCAGTTTGGAGACAGCTAATGCAGAGCAAATGTTTCATGATTCATCAACATCAAACGGTGGACAACCTGGTTTTGATAATGGGAATGCTGATGTTGATTCTATCGTTCCACCATTTGAATCATTGGCTACATCAAGTTCTGAACAATCTTCAAGATACCTTCAAGCATTGGGACACAGCTCAAGAGGTACACCTTTGGAAGATTCTTCATTTCCTCCGCTTGCAACACCTTCCATCGATGACCAGCAAGGTTCCAAAAATGAGTTGGAATCTTCATCCATCAACACTATGGCAGCACGTTTGCGCAGGCATGGCAACAGAAATGTATCTGTTATTAATTCTGGTAATGCTTGGCCTGCAGCAGGACGGGGACTGGTACAAACATCAAGCATCCCTACACAATCTAAACTGTCAACAACTGTTGCTCCTGGAGTGTCGGCTAATTCTGGTCAGGTGAAGACAGTAGTTAAAAATGGGGCTTCACCATCAACTTATGCTAGTTCTTTTCAGGTTACACAGAGAACTGCACATGGACAATGGTCTGCTGGTTCGTTGCAGGAAAAACGTGACAATGGTAGAACTGTTCACCCTACATCTGCTCCAAATCTCACGAAGAGCAACCCTGTTGAAGGTTCGATTTCCGAGTTTCCTCCAATTTCTGCTGCACAGGTGAACAAGTTACCTGCAAACAGTCAATCCCCGTTGAATGTGGAGGATGTTCACTCTGCTAACAAGTCTTTAGTTGAAAGGATTCGTGGCGCTCTTGATTTTGATGAAGATAGATACACACTATTTAAAGACATATCTGCTCAATTTCGCCAAAGCACAATAGATACAGATACATATCTGGATTATGTGCAGCAGTTTGGCTTATCTCATCTTGTACTTGAGATGGCAAGACTGTGTCCAGATCCTCAGAAGCAGCAAGAACTTATTGAATCGAACAACACTAGTTTGCAAAGAAACGCTTTACAAGAAAATAGCCGGGTTCACGGTATCACTAGCAACCATGGCAAAGACAGTAATATCTCCAAGAAAGGTAAAGGTAAGTCTGTAGATGCTAGAGGGATTAACTCCACAGAGAGATTAGCAGATAGCTTTCTACGCACTGTGCATCAACTACAATCAAGTTATAAACCTTCAGAAGATAACTCGGAGGTACTATCAAGGGGTGATTACCGCACCAACAAAGGTAAACTAAAAACTGAGCAGCAGATCAATACAAATTCTGGAAATCAACCTATAACGAAGCTAAATGGGCAGGGTGAAACATCGAGTCACAGTTTATCTAGTCAAAATAGAGAGGATGGGGGTGGTGGGAGCAAGCAACGCAAGAAAGCATCTAAGTTCCTCAAAGTGCGCCTCGGTGATGGTTCTGTTTCAGCACTTCTAGATCGTGAAAATTCATACACCGAACCGGATCCTGGAATAACAGATGGTCTAGATGGTGACAAGGATGGCTCCGGAGGGTTGCCTGCACGAGGTGTTTGGCGAAAAGGAGGTGCTCAGAAACTCTTTTCCTAA 2520 0.4337 MDDCCAVCAEPMEWVAYGPCLHRDVCSTCVARLRFICDDRHCCICKTDCNVVFVTKALGDYTRMINDFSALPSTIREGKAGSYWYHEDTNAYFDDMDHYKMIKAMCRLSCSVCDNIEEQPHDASRRRERFRNIGQLKGHLFHRHKLHMCSLCLEGRKVFICEQKLYTRAQLNQHINTGDSLVDGSESERGGFMGHPMCEFCRTPFYGDNELYTHMSTEHYTCHICQRQHPGQYEYYKNYDDLEIHFRQQHFLCEDEACLAKKFIVFQSEGEMKRHNTTEHGGRMSRSKRNAALQIPTSFRYRHGNEQNQQRRGRARTFSRDISENQLSMAIEASLETANAEQMFHDSSTSNGGQPGFDNGNADVDSIVPPFESLATSSSEQSSRYLQALGHSSRGTPLEDSSFPPLATPSIDDQQGSKNELESSSINTMAARLRRHGNRNVSVINSGNAWPAAGRGLVQTSSIPTQSKLSTTVAPGVSANSGQVKTVVKNGASPSTYASSFQVTQRTAHGQWSAGSLQEKRDNGRTVHPTSAPNLTKSNPVEGSISEFPPISAAQVNKLPANSQSPLNVEDVHSANKSLVERIRGALDFDEDRYTLFKDISAQFRQSTIDTDTYLDYVQQFGLSHLVLEMARLCPDPQKQQELIESNNTSLQRNALQENSRVHGITSNHGKDSNISKKGKGKSVDARGINSTERLADSFLRTVHQLQSSYKPSEDNSEVLSRGDYRTNKGKLKTEQQINTNSGNQPITKLNGQGETSSHSLSSQNREDGGGGSKQRKKASKFLKVRLGDGSVSALLDRENSYTEPDPGITDGLDGDKDGSGGLPARGVWRKGGAQKLFS* 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0943 839 PANTHER EBR1 1 838 - -
Lan4g0943 839 CDD RING-HC_ZNF598 5 46 IPR041888 -
Lan4g0943 839 MobiDBLite consensus disorder prediction 717 731 - -
Lan4g0943 839 MobiDBLite consensus disorder prediction 391 423 - -
Lan4g0943 839 MobiDBLite consensus disorder prediction 509 547 - -
Lan4g0943 839 SMART c2h2final6 196 219 IPR013087 -
Lan4g0943 839 SMART c2h2final6 251 280 IPR013087 -
Lan4g0943 839 SMART c2h2final6 220 250 IPR013087 -
Lan4g0943 839 SMART c2h2final6 108 144 IPR013087 -
Lan4g0943 839 ProSiteProfiles Zinc finger RING-type profile. 5 46 IPR001841 -
Lan4g0943 839 PANTHER ZINC FINGER PROTEIN 598 1 838 IPR044288 GO:0061630|GO:0072344
Lan4g0943 839 MobiDBLite consensus disorder prediction 732 769 - -
Lan4g0943 839 MobiDBLite consensus disorder prediction 664 689 - -
Lan4g0943 839 MobiDBLite consensus disorder prediction 344 368 - -
Lan4g0943 839 MobiDBLite consensus disorder prediction 527 545 - -
Lan4g0943 839 MobiDBLite consensus disorder prediction 707 839 - -
Lan4g0943 839 MobiDBLite consensus disorder prediction 407 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0943 Lan-Chr4 11834225 11839929 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0943 1 839 C2H2 Transcription Factor Family AT3G62240 51.740 0.0 823
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0943 K22381 - gmx:100799878 1306.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0943 4 11834225 11839929 Lan16g0944 16 16501910 16507530 LSH
Lan4g0943 4 11834225 11839929 Lan2g0237 2 1939542 1945410 LSH