Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0942 ATGAGTTGTTTCGGCTGTTGTACAGAGGATAATGGGTCTAAGGCTCCTCAAAGTGGACCACCATATGCACCAAAAAACTCACCAGGAAATGCTGGAAATGTTCAAGATCCTCAAAGTGCAAAGAAGGATGGTCAACCTGTTAGAATTCAGCCCATTGAAGTTCCCGCGATTCCGGTCGATGAGATAATAGAAATTACAGAAAACTTTGGAGAAGACTCTCTGATTGGAGAAGGATCTTATGGAAGAGTATATTATGGAGTTCTTAAAAGTGGGCAGCATGCAGCAATCAAGAAGTTAGATGCCAGTAAACAACCTGATGATGAGTTTTTAGCTCAGGTTTCATTGGTTTCGCGGCTTAAGAATGATAATTTTATTGAATTGCTCGGTTATTCTGTCGATGGAGACTCCCGAATCCTTGCTTACGAGTTTGCAGCTAATCGATCTCTTCGCGATATCTTACATGGAAGAAAAGGTGTTCAAGGAGCACAACCTGGTCCTGTTTTGACATGGGCACAGAGAGTTAAAATTGCTGTAGGGGCTGCAAAAGGGCTTGAGTACTTACATGAGAAGGCTAATCCTCAAATTATCCACAGGGACATCAAGTCCAGCAATGTATTAATCTTTGATGATGATGTTGCGAAAATCGCAGATTTTGATTTATCGAATCAGTCTCCTGACATGGCCGCACGACTTCAATCGACTCGTGTCCTTGGAACCTTCGGTTACCATGCACCAGAATATGCAATGACTGGGCAATTGAATGCGAAGAGTGATGTGTACAGCTTCGGCGTTGTCCTTCTCGAACTTTTAACTGGAAGGAAGCCTGTTGATCATACACTACCTCGTGGGCAGCAGAGCCTGGTTACTTGGGCTACACCAAAACTTAGTGAGGATAAAGTGAAGCAGTGTATAGATGCAAGACTTGATGAAGAGTACCCACCCAAAGCTGTTGCTAAGATGGCTGCTGTTGCTGCATTGTGTGTGCAATATGAAGCTGATTTCAGACCAAACATGAGCATTGTGGTCAAAGCACTTCAACCTTTGATGAATCCAAGACCTGGACCTGTTAATGAAACATCATACTAA 1086 0.4309 MSCFGCCTEDNGSKAPQSGPPYAPKNSPGNAGNVQDPQSAKKDGQPVRIQPIEVPAIPVDEIIEITENFGEDSLIGEGSYGRVYYGVLKSGQHAAIKKLDASKQPDDEFLAQVSLVSRLKNDNFIELLGYSVDGDSRILAYEFAANRSLRDILHGRKGVQGAQPGPVLTWAQRVKIAVGAAKGLEYLHEKANPQIIHRDIKSSNVLIFDDDVAKIADFDLSNQSPDMAARLQSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWATPKLSEDKVKQCIDARLDEEYPPKAVAKMAAVAALCVQYEADFRPNMSIVVKALQPLMNPRPGPVNETSY* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0942 361 SMART serkin_6 69 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan4g0942 361 Gene3D Transferase(Phosphotransferase) domain 1 145 353 - -
Lan4g0942 361 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672|GO:0006468
Lan4g0942 361 Pfam Protein tyrosine and serine/threonine kinase 74 345 IPR001245 GO:0004672|GO:0006468
Lan4g0942 361 MobiDBLite consensus disorder prediction 1 50 - -
Lan4g0942 361 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 358 - -
Lan4g0942 361 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 358 - -
Lan4g0942 361 Gene3D Phosphorylase Kinase; domain 1 31 143 - -
Lan4g0942 361 ProSiteProfiles Protein kinase domain profile. 69 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan4g0942 361 SUPERFAMILY Protein kinase-like (PK-like) 47 345 IPR011009 -
Lan4g0942 361 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0942 Lan-Chr4 11827424 11830530 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0942 66 352 Receptor kinase-like Gene Family AT3G58690 50.173 1.67e-87 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Lan4g0942 PK_Tyr_Ser-Thr 8.2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0942 K13436 - tcc:18613791 595.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0942 4 11827424 11830530 Lan2g0240 2 1973861 1977359 LSH
Lan4g0942 4 11827424 11830530 Lan8g0385 8 6005836 6009666 PCT
Lan4g0942 4 11827424 11830530 Lan20g0560 20 4247889 4251862 PCT
Lan8g0385 8 6005836 6009666 Lan4g0942 4 11827424 11830530 PCT
Lan20g0560 20 4247889 4251862 Lan4g0942 4 11827424 11830530 PCT