Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0940 ATGGGTTCTGAGAATGGAGAAGAACGGCAGCATGAGAGTCGTGTAACCGAAAATCGGAGCAACAATGAGGACTTAACTGCAGTCAACACAAAGGGTGGAAATAGCAAGGGAAAAGAAAAGACTGAAACAGTTTCATATTATAGGTTGTTCTCATTTGCAGACTCCACTGACATTGTGTTAATGATTGTTGGTTCCATTGGAGCTATTGGAAATGGAATAGGAATGCCAATCATGGCAATACTCTTTGGTCAAGTTATTAATAGCTTTGGTACTAACCAGTCTACCAGATCCAATGTTGTCAGTGATGTTTCCAAGATCTGTCTCAAACTTGTATACTTGGGAATAGGCATTGGTGTGGCAGCATTCCTACAGGTTGCTTGTTGGATGGCCACAGGGGAAATACAGGCTGCAAGAATAAGAGGGTTGTATTTGAAGACTATACTAAGACAAGACATTAGTTTCTTTGATATGGAAACTAACACTGGAGAGGTGATAGGGAGAATGTCAGGTGACACAGTTCTCATACAAGAAGCCATGGGTGAGAAGGTTGGAAAATTTATGCAGCTAATATCAACATTCATTGGTGGGTTTGTGATAGCATTTGTGAAAGGGTGGCTTCTTACTGTTGTCATGTTGTCCATTATTCCACTTCTTATAGTGTCGGGTGCTTCTATGGCCATCCTCATAGGAAGGATGGCATCAAAAGGTCAAAGAGCTTATGCAAAAGCTGCAAATGTAGCTGAACAGACAATTGGATCAATAAGAACTGTTGCGTCCTTTACCGGGGGAAAACAAGCAGTCTCTAGTTACAACACATTTCTTGGATATGCTTGCAAAGCAGGAGTTTATGAAGGTTTTGTATCCGGAATGGGTCTTGGCATGGTTATGTTCCTTATATTTTTCGGTTATGGTTTAGCTGTATGGTTGGGTGCAAAGATGATAATGGAAAAAGGATATAACGGGGGTACGGTGATCAATATCATAGTTGCTGTGATAACTGCCTCAAAGTCTCTTGGCCAGGCATCCCCTTCCATGAATGCTTTTGCGGCGGGTCAAGCAGCGGCTTATAAAATGTTTCAGACAATTGAGAGGAAACCAGATATAGATTCTTATGACCCAAATGGTAAAACAATAGAGGATATTCATGGTGAAATAGAGTTAAGGGATGTTTATTTCAGTTATCCAGCTAGACCCGAGGAGCTGATATTCAACGGATTCTCTCTTCATATAACTAGTGGTTCCACTACAGCATTAGTAGGAGAAAGTGGAAGTGGAAAATCAACAGTCATCAGTTTGATAGAAAGATTCTATGATCCACACGAAGGTGAAGTTCTTATCGATGGCGTTAACGTGAAAGAATTTCAGATTAGATGGATCAGGGGGAAAATTGGCCTTGTTAGCCAAGAGCCAGTGCTGTTTGCGTCTAGCATTAAGGATAACATTGCATATGGAAAAGAGGGTGCAACAGTTGAAGAGATAAGAGCTGCAGCCAAACTTGCCAATGCAGCGAAATTCATTGATAAATTGCCACAGGGAATGGACACAATGGTTGGTGAGCATGGAACTCAGTTATCGGGTGGACAGAAGCAGCGTATTGCCATTGCTAGAGCGATCCTGAAAGATCCAAGAATTCTACTTCTAGATGAAGCGACAAGTGCACTTGACGCAGAATCTGAAAGGTTAGTGCAAGAAGCTCTTGACAGGATCATGGGCAACAGAACCACTGTTGTTGTAGCACATCGCTTGAGCACGGTGAGGAATGCTGATATGATAGCCGTAATCCATAGAGGGAGAATGGTTGAAAAAGGAACACACATAGAATTACTCAAGGATCCGGAGGGAGCATACTCACAACTTATATGCTTACAAGAAACAAAGAAGGAATCAAAAGAAAGTACGGGCCGCCAAGACAAGGGTGAAATTACCGAAATGAGGTTATTTCGAAGATCGGGATCATCTGCAGGGAATAGTAGCCGCCACTCATTTTCAAATTCATCTGGTTTACCAACTGGAGTTAACATGTCTGATCCTGAACTTGAACATTCACAAACCAAAGAACAATCACCAAAGGTTCCACTCAAGCGCCTTGTTTCCCTCAACAAACCAGAGATTCCAATGCTTTTGATTGGATGTGTAGCTGCAATAGTGAATGGTGCTGTATTTCCGGTATTTGGTTTATTGATTTCTGTTGCTATCAAAATATTTTATGAACCTTTTCCTGAGCTGAAAAAGGATTCCAAGTTTTGGTCAATAATGTTTGTGATAGTTGGACTTGCATCTTTAGTGGCAAATCCTGCCCGGGCGTACTTTTTCTCTGTGGCCGGAAACAAGTTAATCCAACGTATCAGGCTAATTTGTTTTGAGAAGGTTGTTAGCATGGAGGTTGGTTGGTTTGATGAACCGGAGAACTCAAGTGGTGCAATTGGTGCAAGGCTCTCAGCAGATGCTGCATCTGTCCGTGCCCTTGTTGGTGACGCACTAGGACTAATGGTTGAAAATATAGCAACAGCATTGGTAGGTTTGATAATTGCGTTCAATGCGAGCTGGCAGTTGGCGCTTATTATTACTTTCATGATTCCTTTGATTGGAGCCAATGCATATATTCAAATGAAATTCATGAACGGATTCAGCGCCGATGCAAAGATGATATATGAGGAAGCAAGCCAAGTTGCTAATGATGCAGTTGGAAGCATAAGAACAGTAGCTTCTTTTTGTGCTGAAAAGAAGATTATGGAACTATACAGAGAGAAATGTGAAGGCCCCAAGAAAACAGGAATTCGACAAGGCTTGATCAGCGGAATAGGATTTGGAGCTTCATATTGCATACTATTTTGTGTCAATGCAACATGTTTCTATGCCGGAGCCAGATTTGTACACTCTGGCAAGGCAACATTCTCAGATGTTTTCCGGGTTATCTTAGCTTTAACTTTTACAGCTAATGGAATTTCGCAATCAAGTTCTTTAGCGCCCGATTCTAGCAAAGCCAAGTCAGCTATACAGTCAATATTTAGAATAATTGATCGGAAATCAAAGATAGATCCAAGTGATGAGTCTGGTACAACATTAAATAACATTAAAGGAGAAATTCAGCTTCATCATATAAGCTTTAAGTATGCATCTAGGCCAGATATACCGATTTTTCGAGACCTTAGCTTGACTATCCATTCTGGCAAGACATTGGCCCTTGTTGGTGAAAGTGGAAGTGGAAAATCCACAGTGATTTCGTTGTTACAAAGATTTTATGACCCAGATTCCGGTCAGATTACACTTGATGGAGTGGAAATTCAGAATTTACAGGTAAAGTGGTTAAGGCAACAGATGGGGCTTGTAAGCCAAGAGCCAGTGTTGTTCAATGACACCATTCATGCTAATATTGCCTATGGAAAAGAAGGAAATGCAACTGAAGCAGAAATCATAGCTGCAGCAGAACTAGCCAATGCCCATAGGTTTATTAGTTCATTACAACAGGGTTATGATACTATAGTTGGAGAGAGAGGAATCCAATTATCTGGTGGACAAAAACAAAGGGTAGCCATTGCACGTGCTATTATTAAAACTCCAAAGATATTACTCTTAGATGAAGCCACAAGTGCATTAGATGCAGAATCAGAAAGGGTTGTTCAAGATGCATTAGATAGAGTTATGGTGAATAGAACCACTGTGATTGTGGCACATCGTTTATCTACTATAAAAAATGCTCATGTTATAGCAGTGGTGAAAAATGGAGCTATTGTGGAGAAAGGAAACCATGAAACACTCATTCATATCAATGATGGATTTTATGCTTCATTGGTCCAACTTCATGAAAGTGGTTCAACAATATGA 3825 0.4076 MGSENGEERQHESRVTENRSNNEDLTAVNTKGGNSKGKEKTETVSYYRLFSFADSTDIVLMIVGSIGAIGNGIGMPIMAILFGQVINSFGTNQSTRSNVVSDVSKICLKLVYLGIGIGVAAFLQVACWMATGEIQAARIRGLYLKTILRQDISFFDMETNTGEVIGRMSGDTVLIQEAMGEKVGKFMQLISTFIGGFVIAFVKGWLLTVVMLSIIPLLIVSGASMAILIGRMASKGQRAYAKAANVAEQTIGSIRTVASFTGGKQAVSSYNTFLGYACKAGVYEGFVSGMGLGMVMFLIFFGYGLAVWLGAKMIMEKGYNGGTVINIIVAVITASKSLGQASPSMNAFAAGQAAAYKMFQTIERKPDIDSYDPNGKTIEDIHGEIELRDVYFSYPARPEELIFNGFSLHITSGSTTALVGESGSGKSTVISLIERFYDPHEGEVLIDGVNVKEFQIRWIRGKIGLVSQEPVLFASSIKDNIAYGKEGATVEEIRAAAKLANAAKFIDKLPQGMDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERLVQEALDRIMGNRTTVVVAHRLSTVRNADMIAVIHRGRMVEKGTHIELLKDPEGAYSQLICLQETKKESKESTGRQDKGEITEMRLFRRSGSSAGNSSRHSFSNSSGLPTGVNMSDPELEHSQTKEQSPKVPLKRLVSLNKPEIPMLLIGCVAAIVNGAVFPVFGLLISVAIKIFYEPFPELKKDSKFWSIMFVIVGLASLVANPARAYFFSVAGNKLIQRIRLICFEKVVSMEVGWFDEPENSSGAIGARLSADAASVRALVGDALGLMVENIATALVGLIIAFNASWQLALIITFMIPLIGANAYIQMKFMNGFSADAKMIYEEASQVANDAVGSIRTVASFCAEKKIMELYREKCEGPKKTGIRQGLISGIGFGASYCILFCVNATCFYAGARFVHSGKATFSDVFRVILALTFTANGISQSSSLAPDSSKAKSAIQSIFRIIDRKSKIDPSDESGTTLNNIKGEIQLHHISFKYASRPDIPIFRDLSLTIHSGKTLALVGESGSGKSTVISLLQRFYDPDSGQITLDGVEIQNLQVKWLRQQMGLVSQEPVLFNDTIHANIAYGKEGNATEAEIIAAAELANAHRFISSLQQGYDTIVGERGIQLSGGQKQRVAIARAIIKTPKILLLDEATSALDAESERVVQDALDRVMVNRTTVIVAHRLSTIKNAHVIAVVKNGAIVEKGNHETLIHINDGFYASLVQLHESGSTI* 1275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0940 1274 ProSitePatterns ABC transporters family signature. 1169 1183 IPR017871 GO:0005524
Lan4g0940 1274 SMART AAA_5 1056 1229 IPR003593 -
Lan4g0940 1274 SMART AAA_5 412 598 IPR003593 -
Lan4g0940 1274 CDD ABC_MTABC3_MDL1_MDL2 385 623 - -
Lan4g0940 1274 Pfam ABC transporter 1048 1197 IPR003439 GO:0005524
Lan4g0940 1274 Pfam ABC transporter 404 552 IPR003439 GO:0005524
Lan4g0940 1274 ProSitePatterns ABC transporters family signature. 524 538 IPR017871 GO:0005524
Lan4g0940 1274 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1029 1266 IPR003439 GO:0005524
Lan4g0940 1274 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 374 623 IPR027417 -
Lan4g0940 1274 MobiDBLite consensus disorder prediction 1 38 - -
Lan4g0940 1274 SUPERFAMILY ABC transporter transmembrane region 689 1013 IPR036640 GO:0005524|GO:0016021
Lan4g0940 1274 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1019 1266 IPR027417 -
Lan4g0940 1274 MobiDBLite consensus disorder prediction 649 678 - -
Lan4g0940 1274 PANTHER - 28 1270 - -
Lan4g0940 1274 CDD ABC_6TM_Pgp_ABCB1_D2_like 698 1012 - -
Lan4g0940 1274 Gene3D - 1019 1272 IPR027417 -
Lan4g0940 1274 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 28 1270 - -
Lan4g0940 1274 Pfam ABC transporter transmembrane region 707 978 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lan4g0940 1274 Pfam ABC transporter transmembrane region 62 332 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lan4g0940 1274 SUPERFAMILY ABC transporter transmembrane region 48 369 IPR036640 GO:0005524|GO:0016021
Lan4g0940 1274 MobiDBLite consensus disorder prediction 20 34 - -
Lan4g0940 1274 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 385 621 IPR003439 GO:0005524
Lan4g0940 1274 MobiDBLite consensus disorder prediction 1 19 - -
Lan4g0940 1274 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 62 350 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lan4g0940 1274 CDD ABC_6TM_Pgp_ABCB1_D1_like 61 346 - -
Lan4g0940 1274 Gene3D - 383 640 IPR027417 -
Lan4g0940 1274 MobiDBLite consensus disorder prediction 626 645 - -
Lan4g0940 1274 Gene3D ABC transporter type 1, transmembrane domain 108 1003 IPR036640 GO:0005524|GO:0016021
Lan4g0940 1274 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 708 994 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lan4g0940 1274 CDD ABC_MTABC3_MDL1_MDL2 1029 1267 - -
Lan4g0940 1274 MobiDBLite consensus disorder prediction 626 689 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0940 Lan-Chr4 11800917 11808307 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0940 38 1268 Calmodulin-binding Proteins AT2G36910 44.026 0.0 1049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0940 4 11800917 11808307 Lan16g0950 16 16568804 16576212 LSH