Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0937 ATGAAAAGAAGCTCCTCCTCCAATCAAATTCCCATGTATGGAAAGGATTTCCTTGAGCTAGTAATGGAACAAGGTCAAATTACTGTACAAGGAGGTTCATCAAATAGCACACCAAGTAATCCTTCACATAGGGATGAAGCCACATGCATTATTACAAAAAGACCAAGGTCAAACACAGTACTCACACCTTCCAAGGATTCTGACTTGAGTTCTTCACATTCACATCAAACCAATGATCAAAATAATTTGCAATTCTCACAATACAACAAGAGTTACAACAAGCTTGAAGTTGAAGAATTTGCAAACATAAAACAAGCAAAAGAATCTACTGATAATCACTTATCCACATCTCCATTCAAGAAACCAAGAATGGATGATTCAAATCAAGTACCAAAGAAACTCAAGTACTTGGGAAAATGTGATCAAAGACCAGCAAAAGTGAACAACTTCTCCAACTTTTTAGTACCTAAAGTGTTCATCAAATCTACCCAACCAGCAAAAAAAGCATCTTTGGCAGAATTAGAGGAGATTGAAGCAGGAAAAGTATCAAATTGTGTCACAGGATTTCAAGATCATCAAACTTGTTTAAATGCTAATAAATCAAATAAACATGTTTCCCTTGTTGCAAGAAGTGATGAGAATAGTAGCTTATATAATGAGCCCTTGCTACCATCTTCTCCTGTATGCTCCCTTGAAGCCTCAAATGATCCAAATTTTTGTATCAGGAAACATGAAGACAGTTATGAATCAACTTATTCTAGTGATAATGATGAAGAGACAGAAGTAAAGGAAAAACCATACCAGGAGGGTAACAGTGTGAAGAGAGGAAGGAATGTAAAGATTCATAATTTATATGATAAGAAGGGTAGAGATAAAATGAACAAGAAGATGCGTATATTGAAAGAGCTTATACCCAACTGCAATAAGGTGGACAAAGCTTCATTGCTTGATGATGCCATAGACTATCTTAAGAACCTCAAGCTTCAATTACAGATTATGTCAATGGGTAGTGGACTTTGCATGCCACAAATGATGTTAACTCAATTATCTGGTGCTGGAATGGGTTTCAATCCTAGCACAGGCATTAATCCTTGGAGCATACCTCAGTTAACTATTCCACCACTATCTAATATCAAAGATAACACACTTCAGAATATGTTTGGTACTTTCTCCAACCAAATGCCACAGATTCCAATTCCCCAACATGCACCTAATAATTTCATTCCTATGATGATTGGAAACAATTCTTCTACACAACTTGTGCCAACTACCATACCTACCCACATGCCAAAACATGTTGCTAATTCTTCCCAGTTAAAAACTCTAGATATCTCATATCTAAATGCAAAGGATGAATTATGTGGCATAAACCAAGCAGAGGTTCCCCTTAACCACATTCCGAGCTATCCCTTCTATTTTCCCATAAATAAAGAGGAAAAGAAATAA 1446 0.3624 MKRSSSSNQIPMYGKDFLELVMEQGQITVQGGSSNSTPSNPSHRDEATCIITKRPRSNTVLTPSKDSDLSSSHSHQTNDQNNLQFSQYNKSYNKLEVEEFANIKQAKESTDNHLSTSPFKKPRMDDSNQVPKKLKYLGKCDQRPAKVNNFSNFLVPKVFIKSTQPAKKASLAELEEIEAGKVSNCVTGFQDHQTCLNANKSNKHVSLVARSDENSSLYNEPLLPSSPVCSLEASNDPNFCIRKHEDSYESTYSSDNDEETEVKEKPYQEGNSVKRGRNVKIHNLYDKKGRDKMNKKMRILKELIPNCNKVDKASLLDDAIDYLKNLKLQLQIMSMGSGLCMPQMMLTQLSGAGMGFNPSTGINPWSIPQLTIPPLSNIKDNTLQNMFGTFSNQMPQIPIPQHAPNNFIPMMIGNNSSTQLVPTTIPTHMPKHVANSSQLKTLDISYLNAKDELCGINQAEVPLNHIPSYPFYFPINKEEKK* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0937 481 MobiDBLite consensus disorder prediction 26 84 - -
Lan4g0937 481 PANTHER TRANSCRIPTION FACTOR PIF3 5 203 IPR044273 GO:0003700|GO:0006355
Lan4g0937 481 PANTHER TRANSCRIPTION FACTOR PIF3 211 442 IPR044273 GO:0003700|GO:0006355
Lan4g0937 481 MobiDBLite consensus disorder prediction 106 128 - -
Lan4g0937 481 SMART finulus 283 332 IPR011598 GO:0046983
Lan4g0937 481 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 276 337 IPR036638 GO:0046983
Lan4g0937 481 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 5 203 - -
Lan4g0937 481 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 211 442 - -
Lan4g0937 481 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 277 326 IPR011598 GO:0046983
Lan4g0937 481 Gene3D - 274 334 IPR036638 GO:0046983
Lan4g0937 481 MobiDBLite consensus disorder prediction 25 84 - -
Lan4g0937 481 CDD bHLH_AtPIF_like 277 339 - -
Lan4g0937 481 Pfam Helix-loop-helix DNA-binding domain 282 326 IPR011598 GO:0046983
Lan4g0937 481 MobiDBLite consensus disorder prediction 107 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0937 Lan-Chr4 11770898 11773778 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0937 202 409 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G46970 38.073 3.66e-28 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan4g0937 HLH 4.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0937 K12126 - gmx:100804665 278.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0937 4 11770898 11773778 Lan16g0955 16 16622533 16626467 LSH
Lan4g0937 4 11770898 11773778 Lan20g0569 20 4363811 4365698 PCT
Lan20g0569 20 4363811 4365698 Lan4g0937 4 11770898 11773778 PCT