Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0936 ATGACTTCTTCATGGGGCCTAGCTCTTATATTAATTCAACTCCTTTTCTCAGCTGCAACTTCATTTTCCTCCTTTCACATCATCTCTCTCTCACATTCACCTTATCATAGTTTTGATTCAGTGCCACTCTTGCTGAAAAATCTCTCCAAAAATTCAACACTTCATTGTAGAAAAAAGGTGCAACTTTATACACAAAAACACTACAAAATGGGAAGACACTCTTGCTGTTATAAGCAGAAGTTAAGGAAGGGTCTATGGTCACCTGAGGAAGATGAAAAACTTCTGAGACATGTTACAAAACATGGTCATGGATGTTGGAGTTCTGTTCCTAAACAAGCAGGTTTGGAGAGGTGTGGTAAAAGCTGTAGGCTAAGGTGGATTAATTACTTAAGGCCTGATTTGAAGAGAGGTACATTTTCACAACAAGAAGAAAATCTCATCATTGAACTTCATGCAATTTTAGGGAATAGATGGTCTCAGATTGCAGCACAATTACCGGGAAGGACTGATAATGAAATAAAGAATCTGTGGAATTCTTCGTTAAAGAAGAAACTAAGACAAAAAGGTATAGACCTTATCACTCATAAGCCACTTTCTGAGGTTGAGAATGTAGAGAACAAAATAAGGGACCAAAAGAAAGTACCAAAAGAGTTATCTAATGAATTGAACCTCATGAATTCAGAAAGCTCCAAATCTGATGGAGCTTCTTCAATTGCCACAAAAGGGTATGCAACTGAGATAGAAGGTTCTACTAGCTCAAAGATTATGATGAAAAATTGTTCAAGTAAAGATTTTTTCCTAGACAAGTTTATGTCATCAAATCATGAGAATTATACAAATTTGATAGGAAATTACCCTATTCATATGAGTTATGACTCAAACTCTAGTCATTGGTGTAGCCAAAGTGGAAAGTCCTTTGATATGAACTCAGAATTTATTTCCAATTCCATCAATGTTATGTCTATTATTCCACCTACAACAACCACCTCATTTCTCCCAACTTCATTTTGCTACAAGCCATCTCTTCCTGTCCCCTCGGACGATATATCTACGCCTTCTTTCGCCGCAAACGGATCGTATTACTGGGAAGCCGCTACCTCTAACAATAGCAAAAGCAGCAATAGAAGTAATGGAAGCAAAGATTTGACAAGTAACAACAACTCCTTCATGGAAAGCCAAGTAGAAGAAGCAAAGTGGTATGAATATCTTCACAATCCAATGTTAATGCTATCTTCTGTGCAAAATCAGAGTTCTGAATCTTTATGCAGTGAGATAAAAGCTGAAACATATTTGGTACCTGATACTTCAGGTGCTGTGTTACCTCATTCAAAGCAGCAACAACAAGTTAACAGCAGCATTTGGACATATAGAATAGCATTTTGGTCTTGTATATAG 1395 0.3692 MTSSWGLALILIQLLFSAATSFSSFHIISLSHSPYHSFDSVPLLLKNLSKNSTLHCRKKVQLYTQKHYKMGRHSCCYKQKLRKGLWSPEEDEKLLRHVTKHGHGCWSSVPKQAGLERCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAILGNRWSQIAAQLPGRTDNEIKNLWNSSLKKKLRQKGIDLITHKPLSEVENVENKIRDQKKVPKELSNELNLMNSESSKSDGASSIATKGYATEIEGSTSSKIMMKNCSSKDFFLDKFMSSNHENYTNLIGNYPIHMSYDSNSSHWCSQSGKSFDMNSEFISNSINVMSIIPPTTTTSFLPTSFCYKPSLPVPSDDISTPSFAANGSYYWEAATSNNSKSSNRSNGSKDLTSNNNSFMESQVEEAKWYEYLHNPMLMLSSVQNQSSESLCSEIKAETYLVPDTSGAVLPHSKQQQQVNSSIWTYRIAFWSCI* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0936 464 SMART sant 135 183 IPR001005 -
Lan4g0936 464 SMART sant 82 132 IPR001005 -
Lan4g0936 464 CDD SANT 86 130 IPR001005 -
Lan4g0936 464 CDD SANT 138 181 IPR001005 -
Lan4g0936 464 PANTHER HOMEODOMAIN-RELATED 70 453 - -
Lan4g0936 464 Gene3D - 138 217 - -
Lan4g0936 464 PANTHER MYB DOMAIN PROTEIN 55 70 453 - -
Lan4g0936 464 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 78 134 IPR017930 -
Lan4g0936 464 ProSiteProfiles Myb-like domain profile. 131 181 IPR001005 -
Lan4g0936 464 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 135 185 IPR017930 -
Lan4g0936 464 Pfam Myb-like DNA-binding domain 83 130 IPR001005 -
Lan4g0936 464 Pfam Myb-like DNA-binding domain 136 179 IPR001005 -
Lan4g0936 464 SUPERFAMILY Homeodomain-like 81 177 IPR009057 -
Lan4g0936 464 Gene3D - 80 136 - -
Lan4g0936 464 ProSiteProfiles Myb-like domain profile. 78 130 IPR001005 -
Lan4g0936 464 MobiDBLite consensus disorder prediction 366 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0936 Lan-Chr4 11754507 11756457 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0936 70 446 MYB Transcription Factor Family AT1G09540 45.431 3.75e-94 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan4g0936 Myb_DNA-binding 4.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0936 K09422 - gmx:100815881 475.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0936 4 11754507 11756457 Lan20g0571 20 4394910 4396815 PCT
Lan4g0936 4 11754507 11756457 Lan4g1343 4 22293664 22295584 PCT
Lan20g0571 20 4394910 4396815 Lan4g0936 4 11754507 11756457 PCT
Lan4g1343 4 22293664 22295584 Lan4g0936 4 11754507 11756457 PCT