Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0931 ATGGCTTCAATCATTGCTATTTCTTCCATATCTCATCATCTTCTTCTCTACAAGAAACCAATCACAACAACAACAACTTCAACAACAACAACAACTTCAACACCAACAACAACTTGTACTTCCATTTCATTACACACCAACTCTCACTTTAACAACAACAAAAGGCTCATCTTTCTTCCTTCTGCCATTGCTTCTTCTTCTTCTTCTTCTTCTCTGCTTAGTGAAGAAGCTTTCAAAGGGATACTCCAAAACAATGAATTTGCCCATGACTTTGAAACTAATGCATTGTCTTCTGATAATAAAGTTGAGGATCATGAACTTGATATTTCAAAGCTTGCTTTACCTTCTCGTCTTGTGGAATCACTCCATAAACGTGCCATTACTCATCTTTTTCCCATTCAGAGAGCTGTGTTAATACCTGCACTAGAAGGAAAAGATATCATTGCTCGGGCGAAGACTGGAACAGGGAAGACATTAGCATTCGGGATTCCAATTATTAAAGGCCTTACTGAAGATGAACATGGTATCCCTCATAGGCGGTCTAGTCGTCTTCCTAGAGCATTAGTCCTTGCACCTACAAGGGAGTTAGCAAAGCAAGTAGAGAAAGAGATCAAAGAATCCGCACCTTATCTAAACACAGTTTGCGTTTACGGAGGCGTTTCTTATGGTATTCAGCAAGGGGCGCTTTCGCGTGGTGTTGATGTAGTGGTTGGAACACCTGGTAGAATAATTGACCTGATAAATGGTAACACCCTTAAACTGAGTGAAGTTCAGTATTTGGTCCTCGACGAAGCTGATCAAATGCTTGCTGTTGGGTTTGAGGAGGATGTGGAAGTGATTTTAGAAAAGCTTCCATCGGAGAGGCAGAGCATGCTTTTTTCCGCAACAATGCCAGCGTGGGTGAAGAAGTTGGCTAGAAAATATTTGGATAAGCCATTGACAATTGATTTGGTTGGTGATGAAGACGAAAAGCTTGCTGAAGGGATAAAACTTTATGCTATATTAGCCACCGGCTCGTCAAAACGAACAATTCTTTCTGATCTTATAACCGTTTATGCAAAGGGTGGGAAGACTATAGTTTTTACGCGGACAAAAAAAGATGCTGATGAAGTATCTTTGTCATTGACAAATAGTGTAACTTCTGAAGCACTGCATGGTGATATATCTCAGCATCAAAGAGAAAGAACATTAAATGGTTTTCGGCAAGGGAAATTCACAGTGCTCGTTGCCACTGATGTTGCAGCTCGTGGACTTGATATTACCAATGTTGATTTGATCATCCATTATGAGCTTCCCAATGATCCTGAAACTTTCGTACATCGCTCTGGTCGTACTGGGCGTGCAGGAAAAGAAGGTAATGCCATCCTGTTGTATACCAGTAGCCAGAGAAGAACAGTTAGATCCCTTGAGCATGATGTAGGCTGCAAATTTGAGTTTGTTAGTCCACCAGCTATGGAAGAGATTTTGGAGTCATCCGCTAAACACGTTGTTGCCACACTTAATGGAGTTCATCCCGAGTCTGTTACATTTTTCACCCCAACTGCCGAAAGACTGATTGAAGAACAAGGAGCAAGTGCCCTTGCAGCTGCACTAGCACAGCTGAGTGGATTTTCTCGACCTCCATCATCCCGGTCTCTTATCACCCATGAGCAGGGGTGGGTTACGTTGAAACTGACTCGAGATTCAGATATTTCTAGAAGATTCTTTTCAGCCAGATCAGTCACTGGGTTTCTTTCAGATGTTTATTCTCCAGCTGCTGATGAAGTTGGAAAAATACATATAATTGCAGATGAAAGGACTCAAGGAGCCGTTTTCGATCTTCCAGAGGACATTGCAAAGGAGTTACTTAAAAAGGAGATACCTCCTGGCAGCACTATTTCCAAGATCACAAAGTTACCTCCATTGCAAGATGATGGGCCTGCAGGTGACTCCTATGGGAGGTTTTCCGACAGAGATCGAAGTAACCGAAGAGGTTCTAGGGATCAAAGAGGTTTTAAAACCTCACGTGGATGGGGCGGGAGCGGTGGTCGTGGCCGAGGCTCTGATAATGATTTTGGTGATCCATTTAAGAAAGGTGGTAGAAGTAGTAGACCCGGCGGAAGCAGCCGGTCTCGAACAGGAAAAAGCAATGAGGATAATAGGCTAATTGGAGGTAGACAATCAAGCAGGTCTTCATCATCAGACAGAGGTAGCTTTGGAGGGTCTTGTTTCAATTGTGGGGGATCTGGGCATAGAGCATCAGATTGTCCAAACAATGGAGGCTTTTTTTAG 2271 0.428 MASIIAISSISHHLLLYKKPITTTTTSTTTTTSTPTTTCTSISLHTNSHFNNNKRLIFLPSAIASSSSSSSLLSEEAFKGILQNNEFAHDFETNALSSDNKVEDHELDISKLALPSRLVESLHKRAITHLFPIQRAVLIPALEGKDIIARAKTGTGKTLAFGIPIIKGLTEDEHGIPHRRSSRLPRALVLAPTRELAKQVEKEIKESAPYLNTVCVYGGVSYGIQQGALSRGVDVVVGTPGRIIDLINGNTLKLSEVQYLVLDEADQMLAVGFEEDVEVILEKLPSERQSMLFSATMPAWVKKLARKYLDKPLTIDLVGDEDEKLAEGIKLYAILATGSSKRTILSDLITVYAKGGKTIVFTRTKKDADEVSLSLTNSVTSEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDITNVDLIIHYELPNDPETFVHRSGRTGRAGKEGNAILLYTSSQRRTVRSLEHDVGCKFEFVSPPAMEEILESSAKHVVATLNGVHPESVTFFTPTAERLIEEQGASALAAALAQLSGFSRPPSSRSLITHEQGWVTLKLTRDSDISRRFFSARSVTGFLSDVYSPAADEVGKIHIIADERTQGAVFDLPEDIAKELLKKEIPPGSTISKITKLPPLQDDGPAGDSYGRFSDRDRSNRRGSRDQRGFKTSRGWGGSGGRGRGSDNDFGDPFKKGGRSSRPGGSSRSRTGKSNEDNRLIGGRQSSRSSSSDRGSFGGSCFNCGGSGHRASDCPNNGGFF* 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0931 756 SMART ultradead3 126 332 IPR014001 -
Lan4g0931 756 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 28 747 - -
Lan4g0931 756 MobiDBLite consensus disorder prediction 624 756 - -
Lan4g0931 756 Pfam GUCT (NUC152) domain 536 636 IPR012562 GO:0003723|GO:0004386|GO:0005524
Lan4g0931 756 SMART c2hcfinal6 735 751 IPR001878 GO:0003676|GO:0008270
Lan4g0931 756 CDD GUCT_Hera 543 623 - -
Lan4g0931 756 CDD SF2_C_DEAD 329 458 - -
Lan4g0931 756 Gene3D - 723 754 - -
Lan4g0931 756 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 344 489 IPR001650 -
Lan4g0931 756 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 138 315 IPR014001 -
Lan4g0931 756 Gene3D - 337 520 IPR027417 -
Lan4g0931 756 SUPERFAMILY Retrovirus zinc finger-like domains 716 753 IPR036875 GO:0003676|GO:0008270
Lan4g0931 756 SMART helicmild6 369 449 IPR001650 -
Lan4g0931 756 ProSiteProfiles Zinc finger CCHC-type profile. 736 751 IPR001878 GO:0003676|GO:0008270
Lan4g0931 756 PANTHER - 28 747 - -
Lan4g0931 756 Pfam Zinc knuckle 735 751 IPR001878 GO:0003676|GO:0008270
Lan4g0931 756 MobiDBLite consensus disorder prediction 644 664 - -
Lan4g0931 756 CDD DEADc 118 316 - -
Lan4g0931 756 MobiDBLite consensus disorder prediction 713 733 - -
Lan4g0931 756 Pfam Helicase conserved C-terminal domain 341 449 IPR001650 -
Lan4g0931 756 Gene3D - 108 319 IPR027417 -
Lan4g0931 756 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 469 IPR027417 -
Lan4g0931 756 Pfam DEAD/DEAH box helicase 131 304 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0931 Lan-Chr4 11699613 11704583 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0931 133 471 Eukaryotic Initiation Factors Gene Family AT1G72730 38.081 1.52e-63 216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0931 4 11699613 11704583 Lan20g0581 20 4444231 4450652 PCT
Lan20g0581 20 4444231 4450652 Lan4g0931 4 11699613 11704583 PCT