Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0928 ATGGAGATATCTAATGTTGATTGGAAACCTTTGGAGCCAAAATCTGTTGAAGCGAACGCCGCTTTTTCTAAGCAGTTTGATCCTACTTGCAAATATGTTTCGAAGATTGATCGAACATCGAATTTAGTTCTCGGTGAAAGTGGCAGTAAAAAACAGGAAGTTGTTGAAAAAAGAATGGAGCCAGCAGTAGCCTCTTCCTCTGTTTGCTTTTGCAATGCTGCTAAGAGATGTTCACGTGATCCAATTCGAAGTTCGAAAAGAAAACATCGAAAAGATGAGGACCCTGAGGACCAAAGTGAAGATGTTGGGGAAGAATCATTTGGTGTTAAAAAGGTAGCTCGTGCACGAGATGCTATTGGTTCGAAGAGAAGCCGTTCGGCTGAAGTGCATAATCTATCCGAAAGGAAGCGAAGAGATCGGATCAACGAAAAGATGCGTGCATTGCAAGAAACATCTCAGAATTTTCTGAAGGTGGATAAAGCTTCAATGCTGGATGAGGCAATTGAGTATCTTAAAACATTTCAACTCCAAGTTCTAAGTACTCTCCTTGTTTAA 555 0.4072 MEISNVDWKPLEPKSVEANAAFSKQFDPTCKYVSKIDRTSNLVLGESGSKKQEVVEKRMEPAVASSSVCFCNAAKRCSRDPIRSSKRKHRKDEDPEDQSEDVGEESFGVKKVARARDAIGSKRSRSAEVHNLSERKRRDRINEKMRALQETSQNFLKVDKASMLDEAIEYLKTFQLQVLSTLLV* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0928 184 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 125 174 IPR011598 GO:0046983
Lan4g0928 184 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 122 178 IPR036638 GO:0046983
Lan4g0928 184 PANTHER TRANSCRIPTION FACTOR PIF3 1 178 - -
Lan4g0928 184 SMART finulus 131 180 IPR011598 GO:0046983
Lan4g0928 184 MobiDBLite consensus disorder prediction 77 141 - -
Lan4g0928 184 MobiDBLite consensus disorder prediction 103 141 - -
Lan4g0928 184 PANTHER TRANSCRIPTION FACTOR PIF3 1 178 IPR044273 GO:0003700|GO:0006355
Lan4g0928 184 Pfam Helix-loop-helix DNA-binding domain 129 175 IPR011598 GO:0046983
Lan4g0928 184 Coils Coil 131 151 - -
Lan4g0928 184 Gene3D - 120 181 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0928 Lan-Chr4 11666394 11667548 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0928 60 178 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 63.333 1.04e-35 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan4g0928 HLH 2.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0928 K12126 - lang:109344629 360.918