Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0918 ATGGGTATTAATGTTAGTGATGAATTATCTAAGAAAACTTCAATCTTTGGTCTTAAGATTTGGGAAATAATTGGAATTGCAGTTGGGTTGTTTACTATTATAATCCTCTCTGTGCTCTCAATTTGCCTTACCTCAAGGAAAAAATCTAGAAAAGTGATTAAGGATAACAAGTTTCTTGTTAGTCAAATTCCGAGTTTCTCGAAGGAAATCAAGGAAGTGAGGGTTGAGCAAGTATCAAGTAATGCATTTGCTCCTAGTGATGGAATGCTAGTTACGGTTCGTGATAAATCGAATGCCAAAGAATCGGATGAAGTCATGGTTCATTTAGGTGTAGGGAAGAAGAGGGGAAATTGGGATAGTGGTAGTCGTTCGGATTCATTTCATCGCGTAGAGAAAGATGGAGGAGGGTCACTACAATCGGGCGAAGAAGGTAGCTCTGGCACGATTACATTGTACAAGCACTCTTCTTCATCACTCCCTCTGACAGCTCCTTCACCTCTCTCTGGCCTTCCAGAATTCTCTCACTTGGGTTGGGGTCACTGGTTTACCTTGAGGGATCTTCAACTAGCTACAAATCGGTTTTCCAAGGATAATGTCGTCGGCGAAGGAGGGTATGGAATTGTTTATCACGGACAGTTGGTGAATGGGACACCGGTGGCAGTTAAAAAGATACTCAACAACGTTGGTCAAGCAGAGAAAGAATTTCGGGTGGAAGTTGAAGCTATTGGCCATGTTCGACACAAAAACTTGGTTCGCCTTTTGGGGTACTGCATTGAGGGTACTGACAGGATGTTAGTCTATGAGTATGTCAATAATGGAAACTTGGAGCAATGGCTTCATGGAGCTATGCGTCACGAAGGTTATCTTACCTGGGAAGCACGTATAAAGATTCTCCTCGGCACGGCCAAAGCGCTTGCATATTTGCATGAAGCAATTGAGCCGAAGGTGGTACACCGAGATATCAAATCCAGCAACATATTAATTGACAGTGACTTCAATGCCAAGGTTTCTGATTTTGGCCTGGCCAAGTTACTGGAAGCTGGCGAGAGTCATGTCACAACGCGAGTTATGGGAACCTTTGGATATGTGGCTCCTGAATATGCAAATTCTGGCCTTCTGAATGAAAAGAGTGATGTTTATAGCTTTGGTGTTTTGCTATTGGAAGGAATAACGGGAAGAGATCCAGTCGACTATGGTCGTCCAGCTCATGAAGTGAATCTGGTTGATTGGTTGAAGATGATGGTTGGAAACAGGCGATCGGAAGAAGTATTGGACGAAAACATCGAGGTGAAGCCATCAACTAGAGCTTTAAAAAAGGTTCTCTTAACAGCTTTAAGATGTGTAGATCCTGATTCTGAGAAAAGGCCTAAGATGAGCCAAGTTGTACGTATGCTGGAGTCAGAGGAATACCCTTTACCAAGAGAGGATCGACGACACCGAAAAACTAAAGGAGGAAGTGCAGAGATTGAATCCCTGAAGGAATTTTCTGACATAGAGAAGAGTGAGAGTTAA 1512 0.4292 MGINVSDELSKKTSIFGLKIWEIIGIAVGLFTIIILSVLSICLTSRKKSRKVIKDNKFLVSQIPSFSKEIKEVRVEQVSSNAFAPSDGMLVTVRDKSNAKESDEVMVHLGVGKKRGNWDSGSRSDSFHRVEKDGGGSLQSGEEGSSGTITLYKHSSSSLPLTAPSPLSGLPEFSHLGWGHWFTLRDLQLATNRFSKDNVVGEGGYGIVYHGQLVNGTPVAVKKILNNVGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGTDRMLVYEYVNNGNLEQWLHGAMRHEGYLTWEARIKILLGTAKALAYLHEAIEPKVVHRDIKSSNILIDSDFNAKVSDFGLAKLLEAGESHVTTRVMGTFGYVAPEYANSGLLNEKSDVYSFGVLLLEGITGRDPVDYGRPAHEVNLVDWLKMMVGNRRSEEVLDENIEVKPSTRALKKVLLTALRCVDPDSEKRPKMSQVVRMLESEEYPLPREDRRHRKTKGGSAEIESLKEFSDIEKSES* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0918 503 SMART serkin_6 194 465 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan4g0918 503 Pfam Protein kinase domain 195 463 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan4g0918 503 ProSitePatterns Serine/Threonine protein kinases active-site signature. 316 328 IPR008271 GO:0004672|GO:0006468
Lan4g0918 503 ProSiteProfiles Protein kinase domain profile. 194 473 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan4g0918 503 PANTHER RECEPTOR-LIKE PROTEIN KINASE-RELATED 5 502 - -
Lan4g0918 503 CDD STKc_IRAK 200 466 - -
Lan4g0918 503 Gene3D Transferase(Phosphotransferase) domain 1 270 481 - -
Lan4g0918 503 PANTHER OS01G0323000 PROTEIN 5 502 - -
Lan4g0918 503 MobiDBLite consensus disorder prediction 118 136 - -
Lan4g0918 503 SUPERFAMILY Protein kinase-like (PK-like) 178 473 IPR011009 -
Lan4g0918 503 MobiDBLite consensus disorder prediction 453 503 - -
Lan4g0918 503 MobiDBLite consensus disorder prediction 116 149 - -
Lan4g0918 503 Gene3D Phosphorylase Kinase; domain 1 176 269 - -
Lan4g0918 503 ProSitePatterns Protein kinases ATP-binding region signature. 200 223 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0918 Lan-Chr4 11198801 11203895 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0918 171 468 Trihelix Transcription Factor Family AT1G70460 49.505 4.23e-91 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Lan4g0918 Pkinase 5.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0918 - - gmx:100787014 822.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0918 4 11198801 11203895 Lan9g1444 9 21281302 21285867 LSH
Lan4g0918 4 11198801 11203895 Lan2g1072 2 21980103 21992800 PCT
Lan4g0918 4 11198801 11203895 Lan11g0119 11 686026 690492 PCT
Lan4g0918 4 11198801 11203895 Lan9g1444 9 21281302 21285867 PCT
Lan4g1324 4 22059486 22063365 Lan4g0918 4 11198801 11203895 PCT
Lan11g0119 11 686026 690492 Lan4g0918 4 11198801 11203895 PCT
Lan9g1444 9 21281302 21285867 Lan4g0918 4 11198801 11203895 PCT
Lan2g0987 2 20946012 20951048 Lan4g0918 4 11198801 11203895 PCT