Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0905 ATGGTAAGGGGAGGAAAGGTTAGTGGCAAAATCAATTACAGGAAAAGGGTTCGGTCAAAAAAAGGCAGTGGTTCCGATGATTCTGATGAGGACTATGTGGTTTCGGATGATGGTGAGGGTGTGTCTGATTGTCCAGAGGATTATGGTTTAGATGAATGTCAATCAGAGGAAAGTTTAGATAATTTTGTAGAAGAGGAGGAGGAAATTCAACGAGTTTGTAAATTTAATAGATCAAAGGCCAAAAACAGCATTTGTGATCCAATGGGAAATGGAAGCAAAACCTCACGAAAGAGAGGTAGGACTACACATGCAGAAACACTGGAACAAGCAGAAGAACAACAAGATGGAGATGATGAGGATGATGATGAAGATTTCAATTATGATGACGGTGATGAGGAATTTACACCAGAAGAAGAATATTGCTCAGATGTGGAAGGAGAAACAAGGGGGAGAAAGAAGAAAAATAATGATGTGACAATGAGCAGGAAGGTTTCGCAAAGAAAGGTTCCTGTGACTTCTACCAGAGTTCGAAACAAGGAGGATGAAGATGAGGATTTCAATTGTGATGACGAGGATTTCAATTATGATGATGATGATGGTGATGAGGAATTTACACTAGAGGAAGAATATTACTCAGACGTGGAAGAAGAAACAAGGGGGAAAAGGAAGAAAAATAATGGCGTGAAAATGGACAAGAAGGTTTTGCAAAGAAGGGTTTCTGCGTCTTCCACCAGAGGTCGAAAAAGGAGGAGATCTAGAGCTTCAAACCAACCCTCGAGAAAGAAAAGAAAGAATGGAGGGTTAAGGAGGAAAGTAAGAAGTAATGAGGTAGATGATTTTATAGATAATTGCCCAGCCATCAGGAGAAAGAGTAGAGAAATACCGAGCCGGGTTAGGAGAAGGATTCTTCTCGAAGGTTTCAATTCCGATTCAGATCACGTGTCTGTATCACATGATTATAATTTTACTGTCTCTGAAGAAGAGAGAGAACAAGTGAGAGAAGCCAAGGCATTGTGTAGAAATTTAAGAAGGAACTTGAGGAGTTCTTCCCTTCAAATGAAAAATGAAGAGGTTGGAGTGCATGAGGATCTACAACAGCAATGGAGTCCTCCAGGCCACAAGGGTAAGGAAAAGATAGAGGAACCTCAAGGAAGAAAGGGTAAGGAAAAGGTAGAGGATTTAAAAACCGAGGTGGGAAAGCAGGTGTGTGGAATTTGTCTTTCTGAGGAAAATAAAAGAAGACCAAGGGGAGTACTAGATTGTTGCAGTCACTATTTTTGCTTTGCTTGCATTATGGAGTGGGCAAAGGTGGAGTCTCGCTGCCCTATGTGTAAGCAGAGATTCACAACAATCAATAAGCCTGCACGATCATTGGCAGGGCTTGATTTAAAAGAATCTGTGATTCAGGTGCCGGAACGTGATCAGGTTTATCAGCCCTCTGAAGAAGAACTCATGAGCTATATTGATCCATATGACTCTGTTATTTGTTCAGAGTGCCATGAAGGTGGAGATGATGGTCTCATGTTACTCTGTGATATCTGTGATTCCCCTGCTCACACATATTGTGTTGGTCTGGGGCGGGAAGTACCCGAAGGTAATTGGTATTGTGATGGATGTAGACCAGTTACCTTGGGATCCTCGAGCACCCAAGATCAAGAACCTGTGCCTCCAACGGTGACAACCCAAAGCCCACTTGTTCGACCATCACACGTTCTTGTACCAGAAAGTATAGACCTTCACTTGATTTCTTCACCTTGTACATCGTTTAGTCAAGGATTTGGGCATCTTTCATCTTCTAGATTTTCTGGCAGAAATGTTGAAGGAGCTTCTCCTGTATCTGGAGGAGGGACTTTATCAGAGAGGCGCAGGATCCACCGTCAAATTCAGCAGCTACTTTCAGTAGATAGAATGACTTCTACAACTGGCAGAATTAATGGTATTTCCGCTACCACTTCAACGAGTAACTTGTTTAGCTCTCAAATTGATCAAAGTAGGGAAACAGCCATTCAATATAGACAGACACAGGATGTGGGAACATCATACCACACATTCTTTGAGGAGAGACTATGCCACAATGCCTCTCCATTAATGCAGAATGGTGATATCTTCTCCATTGGAATAAGCAATTCAAGAAGGCCGGTCCAGGACTCAACAACCTTGATTGACGACAGGCTCATGAATGGGGTGCTATGGCCTGCACATGTGGAGATACCCACCATATCCGATTATGGACCAGTCCATCAGTTCAGCAGCAGATCAAACATTGTCACTGACAGTAACTTGTCCTCTGCTATCAAAGGAGAGAGTAACTTCCCCCTTGTCAAAGAGCAGCTGCAGTCAATGGTTAAAAGCCACCTGAAGAGCTTTTCTCGAGATGTTGATTTAGGGTATAGTACTTTCAAGGACATTGCCAGAAGTTCTACACACACCATACTAGCAGCTTGTGGCCTAGAGCATAACAAGACTGAGGTTTGCACTGTGCCCCCACCATTCATTTGTCCCCACATTGAACTAATGGCTGATGGAGAAACTAGTCTAATTAAAGGTTGTTGCTTATCTTGCTTTGATTCTTTTGTAGGAGATGTGGTAAAAAGGATTTTGGACGCAAGAATGTCCTTACAATTAAGATTAGGTCTTTAG 2640 0.4235 MVRGGKVSGKINYRKRVRSKKGSGSDDSDEDYVVSDDGEGVSDCPEDYGLDECQSEESLDNFVEEEEEIQRVCKFNRSKAKNSICDPMGNGSKTSRKRGRTTHAETLEQAEEQQDGDDEDDDEDFNYDDGDEEFTPEEEYCSDVEGETRGRKKKNNDVTMSRKVSQRKVPVTSTRVRNKEDEDEDFNCDDEDFNYDDDDGDEEFTLEEEYYSDVEEETRGKRKKNNGVKMDKKVLQRRVSASSTRGRKRRRSRASNQPSRKKRKNGGLRRKVRSNEVDDFIDNCPAIRRKSREIPSRVRRRILLEGFNSDSDHVSVSHDYNFTVSEEEREQVREAKALCRNLRRNLRSSSLQMKNEEVGVHEDLQQQWSPPGHKGKEKIEEPQGRKGKEKVEDLKTEVGKQVCGICLSEENKRRPRGVLDCCSHYFCFACIMEWAKVESRCPMCKQRFTTINKPARSLAGLDLKESVIQVPERDQVYQPSEEELMSYIDPYDSVICSECHEGGDDGLMLLCDICDSPAHTYCVGLGREVPEGNWYCDGCRPVTLGSSSTQDQEPVPPTVTTQSPLVRPSHVLVPESIDLHLISSPCTSFSQGFGHLSSSRFSGRNVEGASPVSGGGTLSERRRIHRQIQQLLSVDRMTSTTGRINGISATTSTSNLFSSQIDQSRETAIQYRQTQDVGTSYHTFFEERLCHNASPLMQNGDIFSIGISNSRRPVQDSTTLIDDRLMNGVLWPAHVEIPTISDYGPVHQFSSRSNIVTDSNLSSAIKGESNFPLVKEQLQSMVKSHLKSFSRDVDLGYSTFKDIARSSTHTILAACGLEHNKTEVCTVPPPFICPHIELMADGETSLIKGCCLSCFDSFVGDVVKRILDARMSLQLRLGL* 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0905 879 MobiDBLite consensus disorder prediction 373 391 - -
Lan4g0905 879 MobiDBLite consensus disorder prediction 111 141 - -
Lan4g0905 879 SUPERFAMILY RING/U-box 402 451 - -
Lan4g0905 879 ProSitePatterns Zinc finger RING-type signature. 422 431 IPR017907 -
Lan4g0905 879 MobiDBLite consensus disorder prediction 362 391 - -
Lan4g0905 879 PANTHER F18C1.6 PROTEIN 160 868 - -
Lan4g0905 879 PANTHER F18C1.6 PROTEIN 1 190 - -
Lan4g0905 879 MobiDBLite consensus disorder prediction 600 621 - -
Lan4g0905 879 Pfam Ring finger domain 402 445 IPR001841 -
Lan4g0905 879 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 484 559 IPR013083 -
Lan4g0905 879 MobiDBLite consensus disorder prediction 1 51 - -
Lan4g0905 879 PANTHER F18C1.6 PROTEIN 160 868 - -
Lan4g0905 879 PANTHER F18C1.6 PROTEIN 1 190 - -
Lan4g0905 879 ProSiteProfiles Zinc finger RING-type profile. 403 445 IPR001841 -
Lan4g0905 879 MobiDBLite consensus disorder prediction 183 213 - -
Lan4g0905 879 MobiDBLite consensus disorder prediction 214 238 - -
Lan4g0905 879 SMART ring_2 403 444 IPR001841 -
Lan4g0905 879 Coils Coil 325 352 - -
Lan4g0905 879 MobiDBLite consensus disorder prediction 80 274 - -
Lan4g0905 879 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 380 469 IPR013083 -
Lan4g0905 879 MobiDBLite consensus disorder prediction 29 51 - -
Lan4g0905 879 CDD RING-HC_Topors 403 445 - -
Lan4g0905 879 SMART PHD_3 495 540 IPR001965 -
Lan4g0905 879 ProSiteProfiles Zinc finger PHD-type profile. 493 542 IPR019787 -
Lan4g0905 879 SUPERFAMILY FYVE/PHD zinc finger 467 541 IPR011011 -
Lan4g0905 879 MobiDBLite consensus disorder prediction 142 161 - -
Lan4g0905 879 MobiDBLite consensus disorder prediction 242 269 - -
Lan4g0905 879 Pfam PHD-finger 495 541 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0905 Lan-Chr4 11038170 11042095 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0905 490 539 C2H2 Transcription Factor Family AT3G01460 48.077 1.16e-08 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lan4g0905 PHD 3.5e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0905 - - mtr:MTR_7g112410 889.797