Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0894 ATGCCTGGGGGAGATGATGCTCAGAGGAAGAAGAGACTTATAATTATTGGTGTCTCAACATTCTTATTAGTGGCTATGGTAATAGGTGTTGCTGTTAGTGTCACCTTCACTAAGAATGTGTCCATTGATGAAGATCCAAAAGATAACAACAAATCCCATTTATCATCAACAGTGAAAGCTGTCAAAACCCTTTGTCACCCCACAGATTACAAGAAGGAATGTGAAGAGAGTCTCACTAAGGAAGCTGGGAATACCACAGATGCAAGAAAGCTTATTGAGATTGCATTCCAAATAACTATTAAGAGAATTGGTGAGGGACTTGAGAAAGCAAATATCTTGCATGAGGTTGAGAAAGAACCTAGAGCTAAGGAGGCTCTTGTTACATGCAAGCAACTTATGGATCTATCTATTGAGGAGTTCAAAAGATCAATTGAGAGATTGGGAAAGTTTGATCTCAATAACCTTGACAATATCCTCACAAGTTTGAAGGTTTGGCTTAGTGGTGCAGTTACATACCAAGAGACTTGTTTGGATGCATTTGAGAACACCACTTCTGATGCTGGTAATAAGATGAAGGAAGTATTGCAAACTGCGATGCACATGAGTAGCAATGGTCTTGCCATAATCAATGAACTTTCTAAAACTCTCACAAGTTTTCATATCACAAAACCTGTTGCGCGTCGTCTCCTTCAAGATGCTGATGATTTACCAATTCTTGGTCACGAAACCGATAATGATGATGAGTTTCCTGAATGGGTTAAGGATCATGTTGGTGTTCGTAGACTCCTTAAAATGAACACAAGAAAGTTCATGGCTAATGTCATTGTTGCAAAAGATGGTAGTGGAAATTTCACTACCATCACTGATGCATTAAAGAATGTGCCTAGGAAGAACCAAAAACCATTCATTATATGGATCAAACAGGGTGTTTACAATGAGCATGTTGAAGTTTCTAGGAATATGACTCATGTTGTGTTTGTTGGTGATGGTTCCAAAACGACAAGGATCACTGGTAGCAAGAACTTCATTGATGGAGTTAACACTTACAATACTGCTACTGTTGCTGTTCAAGGAGACTATTTCGTTGCCATTGGTGTTGGGTTTGAGAACTCAGCTGGTGCCATTAAACATCAAGCAGTTGCTCTAAGAGTTCAAGCAGACAAGTCCATATTCTACAAATGCAGAATGGATGGGTTCCAAGACACACTTTATGTCCATGCCTTGCGTCAATTCTATAGGGATTGCATCATTTCTGGTACTATCGACTTTGTCTTTGGTGATGCAGTGGCTGTTTTCCAAAACTGCACTTTTGTGGTTAGAAAACCAATGCAAAACCAACAATGCATTGTCACTGCACAAGGCAGAAAAGAGAGGTATCAGCCATCAGGAATAGTTATCCAAGGTGGTGCCATTGTATCAGACCCTAACTACTACCCAGTGAGGTTTGACAACAAAGCTTACTTAGCTCGTCCATGGAAGAATTTCTCAAGAACCATTTTCCTAGACACTTACATTGGTGACTTGATCCAACCTGAAGGATACATGCCATGGCAAACAGATAAAGGAATTCCTACAAATACAGAAACTTGTTTCTATGCTGAGGTTAATAATCGTGGTCCTGGTTCAGACCTAGCAAAACGTGTAAAATGGCAAGGTGTTAAGAACCTTACACCACAAATAGCAACAGATTTCTATCCATCAAAGTTCTTCCATGGTGATGATTGGATTAGGGTTACTAATATTCCTTACTCCTCTGGTGGCAAGAACTCTTCCTCCTTCAAGCATTAA 1788 0.3977 MPGGDDAQRKKRLIIIGVSTFLLVAMVIGVAVSVTFTKNVSIDEDPKDNNKSHLSSTVKAVKTLCHPTDYKKECEESLTKEAGNTTDARKLIEIAFQITIKRIGEGLEKANILHEVEKEPRAKEALVTCKQLMDLSIEEFKRSIERLGKFDLNNLDNILTSLKVWLSGAVTYQETCLDAFENTTSDAGNKMKEVLQTAMHMSSNGLAIINELSKTLTSFHITKPVARRLLQDADDLPILGHETDNDDEFPEWVKDHVGVRRLLKMNTRKFMANVIVAKDGSGNFTTITDALKNVPRKNQKPFIIWIKQGVYNEHVEVSRNMTHVVFVGDGSKTTRITGSKNFIDGVNTYNTATVAVQGDYFVAIGVGFENSAGAIKHQAVALRVQADKSIFYKCRMDGFQDTLYVHALRQFYRDCIISGTIDFVFGDAVAVFQNCTFVVRKPMQNQQCIVTAQGRKERYQPSGIVIQGGAIVSDPNYYPVRFDNKAYLARPWKNFSRTIFLDTYIGDLIQPEGYMPWQTDKGIPTNTETCFYAEVNNRGPGSDLAKRVKWQGVKNLTPQIATDFYPSKFFHGDDWIRVTNIPYSSGGKNSSSFKH* 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0894 595 Pfam Pectinesterase 273 573 IPR000070 GO:0030599|GO:0042545
Lan4g0894 595 PANTHER PECTINESTERASE 13 589 - -
Lan4g0894 595 ProSitePatterns Pectinesterase signature 2. 417 426 IPR033131 -
Lan4g0894 595 PANTHER PECTINESTERASE 13 589 - -
Lan4g0894 595 CDD PMEI-like_3 63 214 - -
Lan4g0894 595 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 60 213 IPR035513 -
Lan4g0894 595 TIGRFAM PME_inhib: pectinesterase inhibitor domain 55 212 IPR006501 GO:0004857
Lan4g0894 595 Gene3D - 267 587 IPR012334 -
Lan4g0894 595 Gene3D Invertase/pectin methylesterase inhibitor family protein 56 214 IPR035513 -
Lan4g0894 595 Pfam Plant invertase/pectin methylesterase inhibitor 60 208 IPR006501 GO:0004857
Lan4g0894 595 SMART PMEI_2 56 208 IPR006501 GO:0004857
Lan4g0894 595 SUPERFAMILY Pectin lyase-like 272 586 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0894 Lan-Chr4 10877598 10886844 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0894 5 586 Carbohydrate Esterase AT3G05610 47.260 0.0 588
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0894 K01051 - gmx:100801686 870.152
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0894 4 10877598 10886844 Lan2g0276 2 2358441 2361513 LSH
Lan4g0894 4 10877598 10886844 Lan8g0331 8 5352778 5355697 PCT