Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0888 ATGGGAATCGATCTTAAGGCTGGTGGTAAGAGCAAAAAGACCAAAAGAACAGCACCAAAATCCAATGATATTTATCTCAAACTTTTGGTTAAGCTTTATCGCTTCCTTGTTCGAAGGACCGGCAGCAAGTTCAATGCTGTGATACTAAAGCGCCTGTTCATGAGCAAGGTTAACAAGCCTCCATTGTCCTTGTCAAGGTTGATCAGATATACCAAGGGGAAGGAAGGTAAAATTGCTGTGGTAGTGGGAACTATAACTGATGATATCAGAACATATGAAGTTCCACCACTAAAAGTTACCGCACTCAGGTTTACAGAGACAGCACGTGCAAGAATCGAAAAGGCCGGTGGTGAATGTTTGACATTTGATCAGCTTGCACTCAGGGCTCCTCTTGGACAGAACACAGTACTTCTAAGAGGCCCAAAGAATGCTAGAGAAGCTGTGAAACATTTTGGTCCTGCACCTGGTGTACCCCACAGCCATACCAAGCCGTATGTCCGATCTAAGGGAAGGAAATTTGAGAAGGCTAGAGGAAAGAGGAACAGCAGAGGATTTAGGGTTTGA 564 0.4433 MGIDLKAGGKSKKTKRTAPKSNDIYLKLLVKLYRFLVRRTGSKFNAVILKRLFMSKVNKPPLSLSRLIRYTKGKEGKIAVVVGTITDDIRTYEVPPLKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFEKARGKRNSRGFRV* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0888 187 MobiDBLite consensus disorder prediction 151 187 - -
Lan4g0888 187 PANTHER 60S RIBOSOMAL PROTEIN L18 1 186 IPR000039 GO:0003735|GO:0005840|GO:0006412
Lan4g0888 187 Pfam Ribosomal protein 60S L18 and 50S L18e 2 187 IPR021131 -
Lan4g0888 187 Gene3D - 1 187 - -
Lan4g0888 187 PANTHER 60S RIBOSOMAL PROTEIN L18-1-RELATED 1 186 - -
Lan4g0888 187 SUPERFAMILY Ribosomal proteins L15p and L18e 20 139 IPR036227 -
Lan4g0888 187 MobiDBLite consensus disorder prediction 164 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0888 Lan-Chr4 10835939 10838637 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0888 3 187 Cytoplasmic Ribosomal Protein Gene Family AT2G47570 79.570 6.14e-105 297
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0888 K02883 - gmx:100791657 358.221
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0888 4 10835939 10838637 Lan2g0279 2 2375823 2378181 LSH
Lan4g0888 4 10835939 10838637 Lan8g0328 8 5327462 5329347 PCT
Lan4g0888 4 10835939 10838637 Lan4g1286 4 21593014 21594461 PCT