Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0886 ATGTGTTTTTATTGTGGGAAAGAGAGAGAGAAAGAGAAAGTGATGGATAAGAATGTATTGGATGATGTAATAAGGAGATTATTAGAAGGGAAAGGAGGAAAACAGGTTCAATTATCTGAGTCTGAAATTCGTCAACTTTGTGTCAACGCTAGACAAATCTTCCTTTCTCACCCTATTCTCCTCAACCTCTCTCCTCCTATTCGTGTTTGTGGTGATATACATGGTCAGTACCAAGACTTACTAAGGCTTTTCGAATATGGAGGGTATCCTCCGTCTGCGAACTACTTGTTCCTCGGGGATTATGTAGACAGAGGGAAACAAAGTTTGGAGACTATATGCTTGCTTTTGGCCTACAAAATAAGATATCCGGACAAAATTCATCTCTTGAGAGGAAACCATGAAGATGCGAAGATAAATCGGATATATGGTTTTTACGATGAATGTAAAAGGAGGTTCAATGTTAGGCTATGGAAGATATTTACTGATTGCTTTAACTGTTTGCCTGTAGCGGCACTCATTGATGGCAAAATACTTTGTATGCATGGGGGTCTCTCTCCAGAATTACAGAATTTGAATCAGATAAAGGAGATTCAAAGACCTACTGAAATTCCGGATAATGGTCTTTTATGTGATCTGCTTTGGGCTGATCCTAATTCTAGCAGTGGCGGCTGGGCGGAGAGTGACCGAGGCGTTTCATGTACTTTTGGATCTGATGTAGTCATAGAGTTTTTGGATAAAAATGACCTTGATCTCATTTGCCGAGGTCATCAGGTTGTAGAGGATGGGTATGAGTTTTTCGCTAAACGAAGATTAGTCACAATATTTTCTGCTCCAAATTATGGTGGGGAGTTTGATAATGCTGGTGCATTATTGAGCGTTGATGAATCGCTTGTGTGTTCCTTTGACATATTGAAACCACTTGATAGAGGATCTTCATCAAAGATGAATCTTAAGAAGCCCCCGAAACCCGGAAAGGTTTAG 981 0.4006 MCFYCGKEREKEKVMDKNVLDDVIRRLLEGKGGKQVQLSESEIRQLCVNARQIFLSHPILLNLSPPIRVCGDIHGQYQDLLRLFEYGGYPPSANYLFLGDYVDRGKQSLETICLLLAYKIRYPDKIHLLRGNHEDAKINRIYGFYDECKRRFNVRLWKIFTDCFNCLPVAALIDGKILCMHGGLSPELQNLNQIKEIQRPTEIPDNGLLCDLLWADPNSSSGGWAESDRGVSCTFGSDVVIEFLDKNDLDLICRGHQVVEDGYEFFAKRRLVTIFSAPNYGGEFDNAGALLSVDESLVCSFDILKPLDRGSSSKMNLKKPPKPGKV* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0886 326 PRINTS Serine/threonine phosphatase family signature 66 93 IPR006186 GO:0016787
Lan4g0886 326 PRINTS Serine/threonine phosphatase family signature 95 122 IPR006186 GO:0016787
Lan4g0886 326 PRINTS Serine/threonine phosphatase family signature 128 152 IPR006186 GO:0016787
Lan4g0886 326 PRINTS Serine/threonine phosphatase family signature 162 188 IPR006186 GO:0016787
Lan4g0886 326 PRINTS Serine/threonine phosphatase family signature 191 218 IPR006186 GO:0016787
Lan4g0886 326 PRINTS Serine/threonine phosphatase family signature 248 268 IPR006186 GO:0016787
Lan4g0886 326 PRINTS Serine/threonine phosphatase family signature 270 286 IPR006186 GO:0016787
Lan4g0886 326 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP1 ISOZYME 8 12 319 - -
Lan4g0886 326 Gene3D - 11 316 IPR029052 -
Lan4g0886 326 SMART pp2a_7 38 308 IPR006186 GO:0016787
Lan4g0886 326 Pfam Serine-threonine protein phosphatase N-terminal domain 20 64 IPR031675 -
Lan4g0886 326 SUPERFAMILY Metallo-dependent phosphatases 19 309 IPR029052 -
Lan4g0886 326 Pfam Calcineurin-like phosphoesterase 66 258 IPR004843 GO:0016787
Lan4g0886 326 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 12 319 - -
Lan4g0886 326 ProSitePatterns Serine/threonine specific protein phosphatases signature. 129 134 IPR006186 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0886 Lan-Chr4 10824620 10827419 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0886 67 251 Calmodulin-binding Proteins AT5G63870 32.727 1.46e-31 118
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0886 4 10824620 10827419 Lan2g0280 2 2378816 2381787 LSH
Lan4g0886 4 10824620 10827419 Lan16g1045 16 17658320 17659942 LSH