Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0872 ATGGAGGAGGAGAGTCATATGGTAACTTCTAACACACCACCCACCAACCCTAACGATGCTCCAGATGTTACGAAAACATCTGGAGATAACTTTGTCTCGGGCTCTGTTGTAAGAGCAGAGTCCGAGGCAGGAGGTTCACATGTGGTGGTGGTGAAGAGGAAAAGAGGAAGACCTCGAAAGGATGTTGGTGACACGAACTTGTTGTCACCAATGTCCATGTCATCACCACCACCGGGTGGAAGTACTGAAAAGCGAAGCCGAGGAAGGCCTCGTGGTTCTGGGAAACTGCAGATTTTAGCTTCTATAGGAGGTTTTGTTGCAGAAACAGCTGGAGGATGCTTCAAACCTCATGTGGTGACAGTGAATGTTGGTGAGGATGTTGTTAGCAGAATATTATCATTTTTACATAAAAGCAATGAAGTTGTTTGCATACTCTCTGCTGCTGGTGCTGTATCAAGTGTCTTCATGCGCCATCAAAGTTCTTCTAGTCAAGTTTTGAAATATGAGGGATGCTTTGAGATTGTGTCTTTATGTGGGTCATGTACCTTTGCTAGTGGCATTGATGGTGCAAGACACAAAAATGCCATGTTGAGTGTTATCCTGGGTAAAGGTGATGGAAGTGTTTTTGGAGGTTGCATTGAGAGCTCAATGATTGCTGCTACTCCTATTCAACTTTCTATGGCCACTTTCAAGCAAAACATTATCAGTAAGAAAGTCAAGAGAAAACTCTCAATTGAATCTCCTAATGAACCTTGTAATCAAGATTCATTAGAGGCTCAACAAAATGTTCCTAAGTTGATAGAAGGGGAACAAAGTCTAGCTTCACCAACATCAGGACCTACGCCAGCAACACCACCTAATGGAGCAACAGATAATGCCATTCCTGCAACAACTAATGGAGAGTCGAATACTTGTATCGATCATGAAGATCTGGATATGAACTCGGAAAACCAGACAATGGATCCCATCACATTACAAAGCAAGGTTGCAGATGTTGATGTCAATGTCCCTTTGATATAA 1020 0.4284 MEEESHMVTSNTPPTNPNDAPDVTKTSGDNFVSGSVVRAESEAGGSHVVVVKRKRGRPRKDVGDTNLLSPMSMSSPPPGGSTEKRSRGRPRGSGKLQILASIGGFVAETAGGCFKPHVVTVNVGEDVVSRILSFLHKSNEVVCILSAAGAVSSVFMRHQSSSSQVLKYEGCFEIVSLCGSCTFASGIDGARHKNAMLSVILGKGDGSVFGGCIESSMIAATPIQLSMATFKQNIISKKVKRKLSIESPNEPCNQDSLEAQQNVPKLIEGEQSLASPTSGPTPATPPNGATDNAIPATTNGESNTCIDHEDLDMNSENQTMDPITLQSKVADVDVNVPLI* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0872 339 MobiDBLite consensus disorder prediction 271 308 - -
Lan4g0872 339 ProSiteProfiles PPC domain profile profile. 108 251 IPR005175 -
Lan4g0872 339 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 10 328 IPR039605 GO:0003680
Lan4g0872 339 Gene3D - 115 249 - -
Lan4g0872 339 MobiDBLite consensus disorder prediction 271 304 - -
Lan4g0872 339 MobiDBLite consensus disorder prediction 67 81 - -
Lan4g0872 339 PANTHER DUF296 DOMAIN PROTEIN 10 328 - -
Lan4g0872 339 SMART AT_hook_2 84 96 IPR017956 GO:0003677
Lan4g0872 339 SMART AT_hook_2 52 64 IPR017956 GO:0003677
Lan4g0872 339 MobiDBLite consensus disorder prediction 7 34 - -
Lan4g0872 339 SUPERFAMILY AF0104/ALDC/Ptd012-like 113 242 - -
Lan4g0872 339 CDD DUF296 115 221 IPR005175 -
Lan4g0872 339 MobiDBLite consensus disorder prediction 1 93 - -
Lan4g0872 339 Pfam Plants and Prokaryotes Conserved (PCC) domain 115 231 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0872 Lan-Chr4 10596157 10599309 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0872 51 230 AT-hook Motif Nuclear Localized (AHL) Family AT2G45850 43.478 8.36e-36 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0872 - - lang:109345802 618.231