Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0867 ATGCTTTTATGCTTTACGCTCACCATGAGAAGGAGATACATGTTTTCCGGCTTGGAGTGTGTAGGTGTTTACTTGTTTGACTTCACTTGGAACAGAATGGATCATCAAGGGCATGGCCAGAACCCAAATATGGGGGTGCCATATGGTTCTAATCCTTATCAGCAAAGCCAAATGACCGGGGCACCGGGGTCAGTTGTTACGTCGGCTGGGAACATGCAATCCACCGGTCAACCTACTGGAGCTCAGCTGGGACAACATCAACTTGCTTATCAGCATATTCATCAGCAACAACAGCAACAACTTCAGCAACAGCTCCAACAATTTTGGGCAAATCAATACCAGGAGATTGAGCAAGTTACTGATTTCAAGAATCATAGTCTTCCCCTGGCAAGGATAAAAAAGATTATGAAAGCTGATGAGGATGTCCGAATGATATCAGCTGAGGCACCTGTCATATTTGCGAGGGCGTGTGAAATGTTCATATTAGAGTTAACCCTGCGTTCCTGGAATCACACCGAAGAGAACAAGAGAAGAACCCTTCAAAAGAATGACATTGCTGCAGCAATCACAAGAACTGATATATTTGATTTCTTGGTTGACATTGTGCCTCGTGAGGACTTGAAAGATGAAGTGCTCGCATCAATCCCAAGAGGAGCAATGCCTGTTGCAGGGCCTGCCGATGCGCTCCCTTATATGTATATGCAACCTCAGCATGCACCACAAGCCGGAGCGCCTGGTGTCATAATGGGAAAACCTGTGATGGACCCAAGTATGTATGCTCAACAGCCTCATCCCTACATGGCACCACAAATGTGGCCACGACCACAAGACCAGCAACCATCATCTCCAGATCATTAG 858 0.4639 MLLCFTLTMRRRYMFSGLECVGVYLFDFTWNRMDHQGHGQNPNMGVPYGSNPYQQSQMTGAPGSVVTSAGNMQSTGQPTGAQLGQHQLAYQHIHQQQQQQLQQQLQQFWANQYQEIEQVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLASIPRGAMPVAGPADALPYMYMQPQHAPQAGAPGVIMGKPVMDPSMYAQQPHPYMAPQMWPRPQDQQPSSPDH* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0867 285 MobiDBLite consensus disorder prediction 259 285 - -
Lan4g0867 285 Gene3D Histone, subunit A 88 204 IPR009072 GO:0046982
Lan4g0867 285 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 33 285 - -
Lan4g0867 285 SUPERFAMILY Histone-fold 93 198 IPR009072 GO:0046982
Lan4g0867 285 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 33 285 - -
Lan4g0867 285 Pfam Core histone H2A/H2B/H3/H4 87 189 IPR007125 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0867 Lan-Chr4 10544194 10547236 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0867 33 272 CCAAT-HAP5 Transcription Factor Family AT1G08970 63.900 8.49e-88 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Lan4g0867 CBFD_NFYB_HMF 6.8e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0867 K08066 - gmx:100527803 393.275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0867 4 10544194 10547236 Lan2g0298 2 2529249 2531279 LSH
Lan4g0867 4 10544194 10547236 Lan16g1070 16 17859176 17862041 LSH
Lan4g0867 4 10544194 10547236 Lan8g0307 8 5171351 5173713 PCT
Lan4g0867 4 10544194 10547236 Lan20g0661 20 5225634 5227978 PCT
Lan8g0307 8 5171351 5173713 Lan4g0867 4 10544194 10547236 PCT
Lan20g0661 20 5225634 5227978 Lan4g0867 4 10544194 10547236 PCT