Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0862 ATGACAACCGCTTTATACATATGTTTCCTTCTCTATTTCCCTCTCGTCACGGCGCAATCCGCTGATGACGAACCTAGTACATTGTCGGACGTAAATTCTGATAATTTTCAACGAGGCTTCAACCCCTCCATCACCATAATCCTAGTGGTTATGGTGGCAGCTTTCTTCTTAATGGGTTTCTTCACAATCTATACTCGCCATTGCACCGATGGTCCATCTAACAACATGCGAATCCATGGCGTCGAAATCCGACCACGTAAGGTAGCGCGTGGGATCGATCGTGCTCTTATAGAAACATTTCCAATTTTAGAATATTCAGAGGTTAAGATTCACAAAATTGGAAAAGAAGCATTGGAATGTGCGATTTGTTTATGCGAGTTTGAAGACTCTGATACGTTGCGTTTAATTCCAAAATGTGATCACGTGTTCCATCCTGAATGCATTGATGAATGGCTATCATCACATTCTACGTGCCCGGTTTGTAGAGCCAACCTTATTCCTCAACCTGGTGAGTCAGTTCACGCGCTACCGATTCAAGCCAACGTTGACTCGGTACATGATATTGAAGCACAAAACGATGTTGTATTGGATCCCACGCCAGAAATAATAAGACATCAAAACACAAGAGTTGTTTCCGAAAGAGTCTTATCTTCAGAAAATCCAGAGTTAGTAATAATTCCACCTTCTAATAAAAGAACATTGAACCGGACCAACACTCGAGATCGGTCCAACCGACCAAGACGATTTCCAAGGTCACACTCGACTGGGCATTCTTTGGTTCAACCTGTTGAGAATACAGAACGGTTCACTTTAAGATTACCGTTAGAAGTTAGAAAGAGAATAATAAACCGACAGTTACAACGTGCTAGTAGCTTCATTTTGTTGACGAACCGAACCGATTGTGAAGGGAGTAGTAGAGGGAGGATTTCTAAGCTATTGAACTTGAGTTTTAAACAAGACCGGTGGGTTTTCACAATGCAACCACCATTTTTAACCAGAGCATTGTCGCCGAAGCCGGTATCGCCGTCGAGGATAACGGTTAGTAACACAACTGAAGGAGACTCCAACCCCCTTACACAACAACCAACCGTTGGAACTCCACTGCCGATTGCTGAATTAGATCGACTTCCGGTTTAA 1137 0.4301 MTTALYICFLLYFPLVTAQSADDEPSTLSDVNSDNFQRGFNPSITIILVVMVAAFFLMGFFTIYTRHCTDGPSNNMRIHGVEIRPRKVARGIDRALIETFPILEYSEVKIHKIGKEALECAICLCEFEDSDTLRLIPKCDHVFHPECIDEWLSSHSTCPVCRANLIPQPGESVHALPIQANVDSVHDIEAQNDVVLDPTPEIIRHQNTRVVSERVLSSENPELVIIPPSNKRTLNRTNTRDRSNRPRRFPRSHSTGHSLVQPVENTERFTLRLPLEVRKRIINRQLQRASSFILLTNRTDCEGSSRGRISKLLNLSFKQDRWVFTMQPPFLTRALSPKPVSPSRITVSNTTEGDSNPLTQQPTVGTPLPIAELDRLPV* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0862 378 MobiDBLite consensus disorder prediction 339 366 - -
Lan4g0862 378 CDD RING-H2_EL5_like 119 162 - -
Lan4g0862 378 Pfam Ring finger domain 119 162 IPR001841 -
Lan4g0862 378 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 167 IPR013083 -
Lan4g0862 378 MobiDBLite consensus disorder prediction 231 258 - -
Lan4g0862 378 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 4 319 - -
Lan4g0862 378 MobiDBLite consensus disorder prediction 334 367 - -
Lan4g0862 378 SUPERFAMILY RING/U-box 119 169 - -
Lan4g0862 378 ProSiteProfiles Zinc finger RING-type profile. 120 162 IPR001841 -
Lan4g0862 378 SMART ring_2 120 161 IPR001841 -
Lan4g0862 378 PANTHER RING FINGER DOMAIN-CONTAINING 4 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0862 Lan-Chr4 10515094 10516713 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0862 5 334 Rapid Response to Elicitors AT3G05200 42.773 1.35e-72 230
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0862 K10664 - gmx:100783823 348.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0862 4 10515094 10516713 Lan8g0305 8 5140846 5141919 PCT
Lan4g0862 4 10515094 10516713 Lan20g0664 20 5251201 5252780 PCT
Lan4g0862 4 10515094 10516713 Lan4g1265 4 21290942 21292008 PCT
Lan8g0305 8 5140846 5141919 Lan4g0862 4 10515094 10516713 PCT
Lan20g0664 20 5251201 5252780 Lan4g0862 4 10515094 10516713 PCT
Lan4g1265 4 21290942 21292008 Lan4g0862 4 10515094 10516713 PCT