Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0861 ATGTTAATGCCAAACAAGTTGTTAGATAGCTCAATAGCTTCTTCCATGGTTGCTAGGCCAAAGAGAACAAGAGTGAAAAGTAGAAGGAATAAGGAGGAACTAGAGAACCAAAGAATGATTCACATTACTGCTGAGCGAAACAGAAGAAAGCAAATGAATGAGTATCTTTCTGTTCTTCACTCTCTCATGCCTGAATCTTATGTCCAAAGGGTTGATCAAGCATCCATAGTTGGAGGGGCTATTAACTTTGTTAAGGAGCTTGAGCAGAGGCTGCAATTTCTTGGTGCTAAGAAAGAAAGTGTAGAAGGAAAATCTGATGCAATTACAAGCATTCCCTTCTCTGATTTTTTCACCTTTCCACAGTATTCAACAAGTGCTAGTTGCAGTGAAAATTCTCTAGCCATGAATGAGCAAGTGAATGAAGTTAAGTGTAGCATTGCTGATATAGAAGTGACAATGATGGAGACTCATGCAAATCTCAAAATAAGATCAAAGAAAAGGCCCAAGCAGCTTTTGAAGATAATCTCTAGTTTGCATGGAATGCATTTCACAATTTTGCATCTAAATGTTCATACCAGTGGGGAAATTGTGCTCTATTGTCTCAGTGTTAAGGTGGAAGATGATTGCAACTTGAGATCAGTGGATGAGATAGCTGCAGCTGTGTACCAAACTGTGAATAGGATTCAAGAAGAGGCAATGTTGAATAATTAA 711 0.384 MLMPNKLLDSSIASSMVARPKRTRVKSRRNKEELENQRMIHITAERNRRKQMNEYLSVLHSLMPESYVQRVDQASIVGGAINFVKELEQRLQFLGAKKESVEGKSDAITSIPFSDFFTFPQYSTSASCSENSLAMNEQVNEVKCSIADIEVTMMETHANLKIRSKKRPKQLLKIISSLHGMHFTILHLNVHTSGEIVLYCLSVKVEDDCNLRSVDEIAAAVYQTVNRIQEEAMLNN* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0861 236 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 10 235 - -
Lan4g0861 236 PANTHER MAX DIMERIZATION, MAD 10 235 - -
Lan4g0861 236 Gene3D - 26 103 IPR036638 GO:0046983
Lan4g0861 236 Coils Coil 84 104 - -
Lan4g0861 236 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 36 87 IPR011598 GO:0046983
Lan4g0861 236 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 36 105 IPR036638 GO:0046983
Lan4g0861 236 SMART finulus 42 93 IPR011598 GO:0046983
Lan4g0861 236 Pfam Helix-loop-helix DNA-binding domain 37 88 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0861 Lan-Chr4 10504341 10506167 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0861 27 205 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 54.922 9.61e-63 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan4g0861 HLH 2.4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0861 - - gmx:100779213 325.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0861 4 10504341 10506167 Lan16g1072 16 17877154 17879440 LSH
Lan4g0861 4 10504341 10506167 Lan20g0665 20 5289046 5291374 PCT
Lan20g0665 20 5289046 5291374 Lan4g0861 4 10504341 10506167 PCT