Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0843 ATGATGAATGGTGTAACAAATGTTGAAGAAGAAGATTACAGTTCTGAGTTTGTAGAAGTTGATCCAAGTGGCAGATATGGCAGATACAATGAAATCCTAGGCAAAGGAGCTTTCAAAACAGTATATAGAGCATTTGATGAGTATCAAGGGACTGAAGTTGCTTGGAACCAAGTGAAGCTGTATGATTTCCTGCAAAGCCCGGAATATCTTGAGAGGCTTTACTGTGAAATTCATCTTCTGAAAACATTGAAACACAAAAACATTATGAAATTTTACACATCTTGGGTGGATACTGCAAATAGGAATATCAACTTTGTTACTGAATTGTTCACTTCTGGTACCCTTAGACAGTATAGGCTGAAGCACAAGAGGGTTAACATCAGAGCAGTGAAGCATTGGTGTAGACAGATCCTCAGAGGACTTCACTATCTTCATAGTCATGACCCTCCCATCATTCATAGAGATCTCAAATGTGATAATATTTTTGTTAACGGAAACCAAGGGGAAGTAAAGATCGGGGATCTCGGCCTTGCAGCAATTCTCGGAAAATCTCATGCTGCTCATTGTGTAGGAACGCCCGAGTTCATGGCCCCCGAAGTATACGAAGAGGCATATAATGAATTAGTTGACATATATTCCTTTGGGATGTGCGTATTAGAAATGGTTACATTTGAATATCCTTATAGCGAATGCAACCATCCAGCACAAATATACAAGAAAGTCATTTCTGGCGAAAGGCCGGTTTCGCTTTATAAAGTAACGGATCCAGAAGTGCGACAATTTGTTGAGAAATGCTTGGCAACAGTGTCTCTCAGGCTCTCTGCAAAGGAGCTCCTAGATGATCATTTTCTTCAAAGTGACGATTACGAGGAATACGATTTGGGACCAGTAGACGGAAGAGCATTGGATTACTTGGGTCCTCTCATCAGTCAACCCTTCTTTGATCTTCATTGGAGCAATAGTAACGTCAGTGCTGAATACTCAAATGGCTTTGGGCTTGAAGGAGAATGGTGTTCTCAGACAACTGAGATTGGACCTAGCCGAATTGAACTTCTCGAGTGCCATGATAATGAAGAACCGTACGAAGATGTTGACATAAGCATCAAAGGCAAGAGGCAAGATGATAACGGTGACATCGTTTTCAGACTAAGAATTGCAGATAAAGAAGGTCGTATACATAATATTTCTTTCCGATTCGACATAGATATGGACACAGCAATAAGTGTAGCAACTGAAATGGTTGCGGAACTTGATATTATCGATCAGGATGTTACCAGAATAGCTGATATGATATATGCTGAAATTGCTTCCTTGGCTCCTGAATTGAGGCCAGGACCAGAGGTCCCGGAAACTCCGGATTTTTCGTTCCTTACATTTCGGCCTTGA 1386 0.4098 MMNGVTNVEEEDYSSEFVEVDPSGRYGRYNEILGKGAFKTVYRAFDEYQGTEVAWNQVKLYDFLQSPEYLERLYCEIHLLKTLKHKNIMKFYTSWVDTANRNINFVTELFTSGTLRQYRLKHKRVNIRAVKHWCRQILRGLHYLHSHDPPIIHRDLKCDNIFVNGNQGEVKIGDLGLAAILGKSHAAHCVGTPEFMAPEVYEEAYNELVDIYSFGMCVLEMVTFEYPYSECNHPAQIYKKVISGERPVSLYKVTDPEVRQFVEKCLATVSLRLSAKELLDDHFLQSDDYEEYDLGPVDGRALDYLGPLISQPFFDLHWSNSNVSAEYSNGFGLEGEWCSQTTEIGPSRIELLECHDNEEPYEDVDISIKGKRQDDNGDIVFRLRIADKEGRIHNISFRFDIDMDTAISVATEMVAELDIIDQDVTRIADMIYAEIASLAPELRPGPEVPETPDFSFLTFRP* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0843 461 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK1 2 456 - -
Lan4g0843 461 Pfam Protein kinase domain 30 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan4g0843 461 CDD STKc_WNK 25 284 - -
Lan4g0843 461 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 2 456 - -
Lan4g0843 461 Gene3D Transferase(Phosphotransferase) domain 1 110 291 - -
Lan4g0843 461 SUPERFAMILY Protein kinase-like (PK-like) 30 318 IPR011009 -
Lan4g0843 461 Gene3D Phosphorylase Kinase; domain 1 10 108 - -
Lan4g0843 461 Gene3D - 356 443 - -
Lan4g0843 461 ProSiteProfiles Protein kinase domain profile. 27 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan4g0843 461 SMART serkin_6 27 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan4g0843 461 ProSitePatterns Serine/Threonine protein kinases active-site signature. 151 163 IPR008271 GO:0004672|GO:0006468
Lan4g0843 461 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 380 433 IPR024678 GO:0004674|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0843 Lan-Chr4 10378082 10383278 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0843 2 447 MAP Kinase Kinase Kinase AT3G22420 60.125 0.0 538
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Lan4g0843 Pkinase 1.3e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0843 K08867 - gmx:100775959 750.355
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0843 4 10378082 10383278 Lan16g1107 16 18185952 18189777 LSH
Lan4g0843 4 10378082 10383278 Lan20g0690 20 5561265 5564486 PCT
Lan20g0690 20 5561265 5564486 Lan4g0843 4 10378082 10383278 PCT