Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0830 ATGTGTGGTGGTGCTATTATCTCCGATTTCATCTCCGGCGGCGGAGCTCCGGCGAGATCTCGTCGTCTCACCGCTGATTTTCTGTGGCCAGATTTGAAGAGTAGCAATCCATGGAAGAGTAAGCGTAAGCCGGTAATCGATTTCGACGATGAGTTCGAAGCTGATTTTAGGGATTTTGAGGAAGATTCTGATATTGAAGGTGAATTTGATGAGGATGATTTCGTCATTGATTCCAAAAAGAAATCTTTTGATTTCAAAGCAACTAAACCTTACAATTTGGTTTCTCGTGGATATACAGCTTCAAAACCTGTGGTATTCGAAGGGCAAGCTGAGAAGTGTGCAAAGAGAAAGAGGAAGAATCAGTATAGGGGGATTCGTCAGCGTCCTTGGGGAAAATGGGCTGCTGAGATCAGGGACCCGAGAAAGGGTGTTCGTGTATGGCTTGGAACCTTCAGCACTGCTGAAGAAGCTGCAAGAGCTTATGATGCTGAAGCGCGGAGGATCCGTGGCACCAAAGCAAGGGTGAACTTCCCTGACGAGGCACCAAGTGCTTCCTCGAAACGTTCCAGGCCAAATCCACAGGAGCAACTAGCAAAGGAAAATCTGAACACTGTTCAGCCCTATGGCAATCTGAACAATGTTCAGCCCAATGGCAATCTGAACTCTGTTCAGCCAAATGGGAATCTGAACGCTGTTCAGCCCAATGACAATCTGAGCCACAAGTTCAATGTTGTTAGCAGCAATGAGGACGACATCTATGCTTCTATCGATCTGTTGGAACAGAAGCCACTGGTTAACCAGTATGCTAACAAGGGTTCATTCTCTAGTAGTAGAAATGAGATCACTTCTCTTGCTTCGTCTGATGATTTCACCCTTTACTTCAGTTCAGATCAGGGAAGTAACTCATTTGATTATTCAGATCTGCCTGAGATATCATCCATGCTTTCTGCTCCTCTGGAAGGTGATACTCATTTTGTGCAAGATGCCAATCAGCAACAGAACAATCTGCATTCTAACTCTCAGGATGGTTCTGCAAAGACACTGTCTGAGGAGCTTGCAGATATTGAATCCGAGTTGAACTTCTTCAAGATGCCATATCTTGAAGGAAGCTGGGATGATGCTTCATTGGAGTCCTTTCTTGCTAGAGACGCAACTCAGGATGACGGAAACCTGACAAACTTTTGGAGCTTTGATGACATCTCCATGGGTGGCAGTGACGTAGTTTTCTGA 1230 0.4537 MCGGAIISDFISGGGAPARSRRLTADFLWPDLKSSNPWKSKRKPVIDFDDEFEADFRDFEEDSDIEGEFDEDDFVIDSKKKSFDFKATKPYNLVSRGYTASKPVVFEGQAEKCAKRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFSTAEEAARAYDAEARRIRGTKARVNFPDEAPSASSKRSRPNPQEQLAKENLNTVQPYGNLNNVQPNGNLNSVQPNGNLNAVQPNDNLSHKFNVVSSNEDDIYASIDLLEQKPLVNQYANKGSFSSSRNEITSLASSDDFTLYFSSDQGSNSFDYSDLPEISSMLSAPLEGDTHFVQDANQQQNNLHSNSQDGSAKTLSEELADIESELNFFKMPYLEGSWDDASLESFLARDATQDDGNLTNFWSFDDISMGGSDVVF* 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0830 409 MobiDBLite consensus disorder prediction 172 194 - -
Lan4g0830 409 ProSiteProfiles AP2/ERF domain profile. 121 178 IPR001471 GO:0003700|GO:0006355
Lan4g0830 409 PANTHER DNA-BINDING DOMAIN 1 402 IPR044808 GO:0003700|GO:0009873
Lan4g0830 409 SUPERFAMILY DNA-binding domain 121 180 IPR016177 GO:0003677
Lan4g0830 409 PRINTS Ethylene responsive element binding protein signature 122 133 IPR001471 GO:0003700|GO:0006355
Lan4g0830 409 PRINTS Ethylene responsive element binding protein signature 144 160 IPR001471 GO:0003700|GO:0006355
Lan4g0830 409 SMART rav1_2 121 184 IPR001471 GO:0003700|GO:0006355
Lan4g0830 409 CDD AP2 121 179 IPR001471 GO:0003700|GO:0006355
Lan4g0830 409 Gene3D AP2/ERF domain 120 179 IPR036955 GO:0003700|GO:0006355
Lan4g0830 409 PANTHER EREBP TRANSCRIPTION FACTOR 1 402 - -
Lan4g0830 409 Pfam AP2 domain 121 170 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0830 Lan-Chr4 10286988 10289451 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0830 1 402 AP2-EREBP Transcription Factor Family AT3G14230 42.857 2.96e-59 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lan4g0830 AP2 3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0830 K09286 - gmx:100170723 394.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0830 4 10286988 10289451 Lan11g0580 11 4617673 4620480 PCT
Lan4g0830 4 10286988 10289451 Lan2g0327 2 2901269 2903522 PCT
Lan11g0580 11 4617673 4620480 Lan4g0830 4 10286988 10289451 PCT
Lan2g0327 2 2901269 2903522 Lan4g0830 4 10286988 10289451 PCT