Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0825 ATGGATGATACTAGTGAGAAATTGGGTGAATCACCAGCTACTGAATTAACAGGAAAAATCATGATTGTAGCTATAATAATCTTATTCTTGGTTGTTGTATTTTGCTTTTTCCTTCACCTCTATGCCAAATTCACCTTATGCACCGGATCACACCGCCACCGCCGCCGCCGCCACCGCTTTGTCTTTGCCACTAGCCAAGAGCCACCAAGTCATGGTGCCCTTAGAAAGGGACTTGACCCTTTGGTGCTAAGGTCACTGCCCATAATTGTGTTTCAATCTGAGGAATTTAAGGATGGTTTGGAATGTGCAGTTTGTTTATGTGATGTTGTTGATGGAGAAAAAACTAGGCTTTTACCAAAATGCAATCATGGGTTTCATGTAGAATGTATTGATATGTGGTTTCAATCACATTCTAATTGCCCTATTTGTAGAAACCCTTTAGATTCTGAATCATGTAGTTCAAATGATAGACAAAATGCCTCAGAGAATATTGAACCATTAGAGCCAGAAAATTCTCCAAATTTTCCCACAAATGTGTTTATTTGGGGTAACCAGAGTCAAATTAGTTCAATTGGTGCACTTTTGGAAGATAATAGTAGTAATAGTAGTAGTAGTTCTTCTACTATTGCTACTACTACTTGCACTAGTGCTAGTTGTAGTAGCAGCAGAAATCATGGAATGTTGGTGATTGATATACCGAGTGAGAGTACTTCATCTTCTATGTCACCTTCTGCAAGCAGATTTGCTGAAGATGATTTGAAATCGCCGATTTCGGCTAGGTTGAGATCACTGAAGAGGCTTTTCAGCTGGGACAGAAGGTTGAATCCTTCTACTCCTAGTCCTGTAGATGTGGAACAAGGAGGGGAAGCACAACACTAG 879 0.4016 MDDTSEKLGESPATELTGKIMIVAIIILFLVVVFCFFLHLYAKFTLCTGSHRHRRRRHRFVFATSQEPPSHGALRKGLDPLVLRSLPIIVFQSEEFKDGLECAVCLCDVVDGEKTRLLPKCNHGFHVECIDMWFQSHSNCPICRNPLDSESCSSNDRQNASENIEPLEPENSPNFPTNVFIWGNQSQISSIGALLEDNSSNSSSSSSTIATTTCTSASCSSSRNHGMLVIDIPSESTSSSMSPSASRFAEDDLKSPISARLRSLKRLFSWDRRLNPSTPSPVDVEQGGEAQH* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0825 292 ProSiteProfiles Zinc finger RING-type profile. 102 144 IPR001841 -
Lan4g0825 292 CDD RING-H2_EL5_like 101 144 - -
Lan4g0825 292 MobiDBLite consensus disorder prediction 272 292 - -
Lan4g0825 292 MobiDBLite consensus disorder prediction 234 253 - -
Lan4g0825 292 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 4 286 IPR044675 -
Lan4g0825 292 PANTHER RING-H2 FINGER PROTEIN ATL3 4 286 - -
Lan4g0825 292 SMART ring_2 102 143 IPR001841 -
Lan4g0825 292 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 150 IPR013083 -
Lan4g0825 292 Pfam Ring finger domain 101 144 IPR001841 -
Lan4g0825 292 SUPERFAMILY RING/U-box 82 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0825 Lan-Chr4 10237167 10238747 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0825 13 275 C3H Transcription Factor Family AT1G53820 38.436 9.06e-56 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0825 - - lang:109329488 330.872
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0825 4 10237167 10238747 Lan16g1126 16 18334676 18351157 LSH
Lan4g0825 4 10237167 10238747 Lan11g0590 11 4691908 4692964 PCT
Lan11g0590 11 4691908 4692964 Lan4g0825 4 10237167 10238747 PCT