Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0818 ATGGATTTGATTCAACAAGTTAAAGGATATTCTAATAGCAGAGAAGAAGATGAGTTAGATGAGGAAGCTCCAGCAACAAAAGCAGAAGAAATTATCAGAATTCCAAGAGAAGAAGAAATCAATAGTAGGTTACACCAGTTGATGGACTTGTCACTTGGGAGAAACAACAAAAACAATGAATCAAATTTCCAACAAAGAGTAGTAATTGTTGGTGGTTGTGGTAGTACTACTAATACTACTCCTCATGATGCCACTTATTCTTCATCAATATCTTCAACCAACAACAATGAGGGAAGTAATAATAGCAATGTGGAGAAAGAACACATGTTTGATAAAGTAGTAACACCAAGTGATGTAGGAAAGTTGAACAGATTAGTGATACCAAAACAACATGCTGAGAAGTACTTTCCACTTGATTCCTCATCAAATGAAAAGGGTCTTCTCCTAAACTTTGAAGACAGAAATGGGAAGCTATGGAAGTTTAGGTACTCTTATTGGAATAGTAGTCAAAGCTATGTGATGACAAAAGGATGGAGCCGTTTTGTTAAGGAGAAGAAGCTTGATTCTGGTGACATTGTTTCATTCAAACGCGGCGTCGGAGATTTGTATAAACATGTATTGTATATAGATTGGAAGAGAAGGCTTGATCATTCTCATAATCATAATAATCTTCTTCATGATCCTTCATCAACACCTTTGTTTCTTCCTAATCAATATTCTTCCATTACTTGGGGTGGAAGATTGTACTCTTTGCCTTCTCCAAATGCATCAACTTCTACTATGCTTCCTCCTCATAACAATCTCAATTATAATAGGCCTTTGTATAATACCTTGCATCATCAACAACTACAATATTACCAGCAATACTATGATGGTAGAAGTGGAAGTGGACTAGGTTACCTGAGGTCAACACCATCAATGTCAATGCATCAAATTGGTGATCAAAACTTGCAAGAGAAAGGGAATAATATTGCCCCTATGATCATTGATTCGGTGCCGGTTACTCATCATCATCATCATCATCATCAACATCAACAAGATCCTCACCATGGTGGTATTGGTACTACTACTAGTAATGCAGGAAAAACATTAAGGCTATTTGGAGTGAACATGGAATGTGCTTCTTCAGAAGATTCAAAGTGCTTGTCATCTTCAGCTTCAATGGCTAATTCACTTTCTTCTTCTTCTTCTTCTCTAAGGGCACCCTATGAAGATCACTCACTTTCATCACCATCTACAAGGGGAACTTCAGTGCTTTTTGATTTGGATCCTTCTTTGCAATACAAACAATGA 1293 0.3689 MDLIQQVKGYSNSREEDELDEEAPATKAEEIIRIPREEEINSRLHQLMDLSLGRNNKNNESNFQQRVVIVGGCGSTTNTTPHDATYSSSISSTNNNEGSNNSNVEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNEKGLLLNFEDRNGKLWKFRYSYWNSSQSYVMTKGWSRFVKEKKLDSGDIVSFKRGVGDLYKHVLYIDWKRRLDHSHNHNNLLHDPSSTPLFLPNQYSSITWGGRLYSLPSPNASTSTMLPPHNNLNYNRPLYNTLHHQQLQYYQQYYDGRSGSGLGYLRSTPSMSMHQIGDQNLQEKGNNIAPMIIDSVPVTHHHHHHHQHQQDPHHGGIGTTTSNAGKTLRLFGVNMECASSEDSKCLSSSASMANSLSSSSSSLRAPYEDHSLSSPSTRGTSVLFDLDPSLQYKQ* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0818 430 Gene3D - 103 224 IPR015300 -
Lan4g0818 430 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 80 405 - -
Lan4g0818 430 MobiDBLite consensus disorder prediction 386 420 - -
Lan4g0818 430 ProSiteProfiles B3 DNA-binding domain profile. 110 212 IPR003340 GO:0003677
Lan4g0818 430 MobiDBLite consensus disorder prediction 335 359 - -
Lan4g0818 430 SUPERFAMILY DNA-binding pseudobarrel domain 107 210 IPR015300 -
Lan4g0818 430 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 80 405 IPR044800 GO:0003700
Lan4g0818 430 Pfam B3 DNA binding domain 110 207 IPR003340 GO:0003677
Lan4g0818 430 MobiDBLite consensus disorder prediction 77 102 - -
Lan4g0818 430 MobiDBLite consensus disorder prediction 1 26 - -
Lan4g0818 430 CDD B3_DNA 108 197 IPR003340 GO:0003677
Lan4g0818 430 MobiDBLite consensus disorder prediction 386 430 - -
Lan4g0818 430 SMART B3_2 110 215 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0818 Lan-Chr4 10196289 10198795 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0818 104 376 RAV Transcription Factor Family AT2G46870 48.399 2.44e-70 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lan4g0818 B3 1.4e-27 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0818 4 10196289 10198795 Lan16g1134 16 18407967 18410472 LSH
Lan4g0818 4 10196289 10198795 Lan9g1021 9 17257480 17259980 PCT
Lan9g1021 9 17257480 17259980 Lan4g0818 4 10196289 10198795 PCT