Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0812 ATGCCAAAATCGAAGTTAAAAAAAAAAATGGCGGCGAATGCTACTCTATCTCTTTGTTTCAATTATTCATTCTTAAACAACAAACCCCAATTCGTAACTTCATCAAAACGATGCGTTTCATTCTCACCACTTCCCATTGTGTTAAGGTCTAATACTAGGGTTTACACAGCTTTGTCAACAGAACACGTAAACGACGACGTTTCAGAAAATGAAGAACAATGGATGAAGCCAAAAGCTACAGAAGTTTACGTTTTTAACCTTCCTAGAAAAATCGACTCTGAATATCTACTTGATTTGTTCAAGCCTCACGGAAACGTTTTATATGTAGAGGTTTGCCGAAATGCCGAGACTGGTGAAAGTAAAGGGTGCGCTTATGTAACACTGGAATCTATTAACTCAGCAAGAAACGCAGTTTCCGCATTGGATGGATTGGATGTTGGTGGGCGCGAAATGCGGGTTAGATTTTCAGTTGAAATGAATCGTAGAGGGAAGAATCGTAAGACAATGAACTCTTCTCCAAAGAAAGTTATATACTACGAATCTCCGTATCAGTTGTATGTTGGGAATCTTCCTAAGCATGTTAGGCCTGAAGAATTAAGACATCTCTTTGTTAGATTTGGTACCGTGGCTAGTTTAAGGATATTTATTGACAAGAAGGAGGAAATATCTCGAGTCTATGCATTTGTCTCTTTCCTTTCAGAGAGAGAACGCGACGCAGCAATGTCCATTAATGGAATAGCATTCGGCGGTCGTACACTTGTGCTTAGACAAGGGGGTGGAAAAGTCTGA 789 0.3967 MPKSKLKKKMAANATLSLCFNYSFLNNKPQFVTSSKRCVSFSPLPIVLRSNTRVYTALSTEHVNDDVSENEEQWMKPKATEVYVFNLPRKIDSEYLLDLFKPHGNVLYVEVCRNAETGESKGCAYVTLESINSARNAVSALDGLDVGGREMRVRFSVEMNRRGKNRKTMNSSPKKVIYYESPYQLYVGNLPKHVRPEELRHLFVRFGTVASLRIFIDKKEEISRVYAFVSFLSERERDAAMSINGIAFGGRTLVLRQGGGKV* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0812 262 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 185 253 IPR000504 GO:0003723
Lan4g0812 262 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 82 152 IPR000504 GO:0003723
Lan4g0812 262 CDD RRM_SF 82 154 - -
Lan4g0812 262 SMART rrm1_1 184 256 IPR000504 GO:0003723
Lan4g0812 262 SMART rrm1_1 81 154 IPR000504 GO:0003723
Lan4g0812 262 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 80 158 IPR000504 GO:0003723
Lan4g0812 262 PANTHER OS02G0815200 PROTEIN 53 258 - -
Lan4g0812 262 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 53 258 - -
Lan4g0812 262 SUPERFAMILY RNA-binding domain, RBD 70 167 IPR035979 GO:0003676
Lan4g0812 262 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 183 260 IPR000504 GO:0003723
Lan4g0812 262 SUPERFAMILY RNA-binding domain, RBD 180 256 IPR035979 GO:0003676
Lan4g0812 262 Gene3D - 164 258 IPR012677 -
Lan4g0812 262 CDD RRM_SF 185 256 - -
Lan4g0812 262 Gene3D - 49 163 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0812 Lan-Chr4 10127236 10129765 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0812 82 253 Eukaryotic Initiation Factors Gene Family AT1G22760 29.480 7.41e-16 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0812 - - lang:109345739 522.702
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0812 4 10127236 10129765 Lan16g1140 16 18462329 18464745 LSH