Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0810 ATGCTCCCTTATATCATTTTATTAAACCCTAGATTCACATTACAATTGCGGCGTGTACCCAATTCGCAGAGAAATCACATTTCACTATTCTTCGATCTCTTCCTTTCTAGTGTGAAAATGTCGCTTGGTGAAACTGCTTCCACTTATGCTGCTTTGGTCCTCCACGATGCTCAAATTCCTGTGACTGCTGACAATATCTCCGCCTTATTGAAAAGTGCCAATGTTAAAGTTGAATCATATTGGCCCACCTTATTTGCTAAACTTGCCGAGAAGCGTAATGTTGGGGAATTGATAGCAAGTGCTGGAGGCGCTGGAGCTCCTGTTGCTGTTGCTGCAGCGCCAGTTGCTGCTGCAAGTGGTGGTGCTGCTGCCGCTGCTGCTCCTGCTCCTCAGGAGGAAGAACCGAAAGAAGAGAGCGATGATGATTTGGGATTCGGCTTGTTCGATTAG 450 0.4644 MLPYIILLNPRFTLQLRRVPNSQRNHISLFFDLFLSSVKMSLGETASTYAALVLHDAQIPVTADNISALLKSANVKVESYWPTLFAKLAEKRNVGELIASAGGAGAPVAVAAAPVAAASGGAAAAAAPAPQEEEPKEESDDDLGFGLFD* 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0810 149 Pfam 60s Acidic ribosomal protein 61 148 - -
Lan4g0810 149 Gene3D - 40 102 IPR038716 -
Lan4g0810 149 CDD Ribosomal_P1 44 148 - -
Lan4g0810 149 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1 40 139 - -
Lan4g0810 149 MobiDBLite consensus disorder prediction 123 149 - -
Lan4g0810 149 Hamap 50S ribosomal protein L12 [rpl12]. 45 149 IPR027534 GO:0003735|GO:0005840|GO:0006414
Lan4g0810 149 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN 40 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0810 Lan-Chr4 10118352 10119841 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0810 40 149 Cytoplasmic Ribosomal Protein Gene Family AT5G24510 51.724 4.02e-33 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0810 K02942 - egr:104443735 117.472