Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0799 ATGGCACATCTGAGGAATATTCAAGCAGAATCAGGTTTTGGAGATGATGATCTAAATACAGAGCTATGGAAGCTATGTGCAGGGCCTTTGGTGAATGTTCCTCATGCTGAAGAGAGAGTTTATTACTTTCCTCAAGGTCACATGGAACAATTGCAAGCATCAACAACTCAGGAATTGAACCAGCAAATTCCCCATTTCAATCTCCCTTCCAAGATTCTTTGCCGCGTTATGCATATTCAGTTGTTGGCTGAACAAGACACCGATGAAGTTTATGCTCGTATCACTTTGCTTCCAGAATCAGATCAAAATGAGCCTACAAGTCCTGATCCATATCCACCCGAGACTCAGAAACAGACCTTTCACTCTTTTAGCAAGATATTAACCGCATCGGATACCAGCACACACGGAGGATTTTCAGTTCTGCGTAGACATGCTACTGAGTGCTTGCCTCAACTGGACACGGCACAACAAACGCCTACCCAGGAATTAGCAGCCAAGGATCTTCATGGCTTTGAGTGGAAGTTTAAGCATATTCTTAGAGGCCAACCAAGGAGGCACTTGCTTACAACTGGTTGGAGTTCATTTGTCACTTCCAAAAGATTGGTCGCCGGAGATGCTTTTGTGTTTTTAAGGGGAGAGAATGGTGAACTGAGAGTTGGTGTTAGGCATCTCGCTCTGCAGCAGAGTCCGATGCCTTCGTCTGTGATATCAAGCCAGAGCATGCATCTTGGAGTGCTCGCCACTGCTTCTCATGCTGTTATGACCGGTACCATGTTTGTGGTTTATTACAAACCAAGGACTAGCCAGTTTATTATTGGCCTGAACAAATATCTGGAGGCAGTTAACAATAAATTTTCAGTTGGAAACCGATTCAAGATGAGATTTGAGGTCGAGGACTCACCTGAAAGAAGATTTTCCGGTACCATTGTCGGGGTTGGGGATGTATCTCCTGCGTGGTCAGATTCTCAATGGCGTTCGTTGAAGGTTCAATGGGATGAACCGGCAACAATTCCTCGGCCGGAGAGGATTTCTGTTTGGGAGTTAGAACCTTTTGTAACTTCTGCTGTAACTGTCACTCAACAAGTGGTTAAGAGCAAAAGATCTAGGCCTGCTGATGCTCAATCATCTGAAGTTGCTCCTAGTTCTCATGCTTCAACTTTGTGGTATCACTGGCCTTCCTTGTCTCAATTAGGTGGTGTTTGCGAAGTTCAGAGCAACGAAAGTCATGGCGTGTGGTCATTGAGGCAGAAAGAAATTAATGACAATCCAAACGATACGAACTATGCTAGCTCGAGAGTACGATTCGAAGGCATATGGCCTTCATCTCCTCATTTGAATGTCCCTTCAAACTATTTTCAAGACCTCAGAAACAACAAATCTGTCCCGATGACACAATCGTCTAACATTGGCTGTTCTCCTCCTTCATCTAGGCCTAACGATGGTTCAATGCATGACCAAGTTGTAAATCGTAAAAAGATGGAGAATCGCACAGACATCTGGGTATTTGGAGTTAATTTGAATAGCAATTTAGCCAATGTTGCAGTTGCTCCGAAGGAATTTGAATGTCCAGCCACGGTTACTTCTGGTGCATCGCGAAATGAGAGGCAGAACACTCAGGCCTCTGTACCGTCCTCGAGGACTCGTACTAAGGTGCGAATGCAAGGTGTTGCTGTTGGTCGCGCCGTTGATTTGGCCATGCTGAATGGTTATGATGATCTAATAGTCGAGCTTGAGAAGTTATTCGACATTAAAGGAGAGCTTCAATCGCAAAACAAATGGGTGATTACTTATACCGATGATGAAAATGACACGATGCAAGTTGGCGATGATCGATGGCTGGAATTCTGTACTATGGTGAAGAGGATTTTCATTATTTCAAAAGAAGATGTGAAGAAGATAAAATCCAAGGATTCTTCTGCTTCATCAGAGATTGAAGAGACTCTGCTAAGCATAGATTTCACAGAGTAG 1968 0.4395 MAHLRNIQAESGFGDDDLNTELWKLCAGPLVNVPHAEERVYYFPQGHMEQLQASTTQELNQQIPHFNLPSKILCRVMHIQLLAEQDTDEVYARITLLPESDQNEPTSPDPYPPETQKQTFHSFSKILTASDTSTHGGFSVLRRHATECLPQLDTAQQTPTQELAAKDLHGFEWKFKHILRGQPRRHLLTTGWSSFVTSKRLVAGDAFVFLRGENGELRVGVRHLALQQSPMPSSVISSQSMHLGVLATASHAVMTGTMFVVYYKPRTSQFIIGLNKYLEAVNNKFSVGNRFKMRFEVEDSPERRFSGTIVGVGDVSPAWSDSQWRSLKVQWDEPATIPRPERISVWELEPFVTSAVTVTQQVVKSKRSRPADAQSSEVAPSSHASTLWYHWPSLSQLGGVCEVQSNESHGVWSLRQKEINDNPNDTNYASSRVRFEGIWPSSPHLNVPSNYFQDLRNNKSVPMTQSSNIGCSPPSSRPNDGSMHDQVVNRKKMENRTDIWVFGVNLNSNLANVAVAPKEFECPATVTSGASRNERQNTQASVPSSRTRTKVRMQGVAVGRAVDLAMLNGYDDLIVELEKLFDIKGELQSQNKWVITYTDDENDTMQVGDDRWLEFCTMVKRIFIISKEDVKKIKSKDSSASSEIEETLLSIDFTE* 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0799 655 SMART B3_2 123 225 IPR003340 GO:0003677
Lan4g0799 655 CDD B3_DNA 121 222 IPR003340 GO:0003677
Lan4g0799 655 PANTHER AUXIN RESPONSE FACTOR 11 524 639 - -
Lan4g0799 655 PANTHER AUXIN RESPONSE FACTOR 11 8 514 - -
Lan4g0799 655 ProSiteProfiles PB1 domain profile. 546 638 IPR000270 GO:0005515
Lan4g0799 655 Pfam Auxin response factor 249 328 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lan4g0799 655 Pfam B3 DNA binding domain 123 222 IPR003340 GO:0003677
Lan4g0799 655 Gene3D - 284 357 - -
Lan4g0799 655 MobiDBLite consensus disorder prediction 526 548 - -
Lan4g0799 655 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 8 514 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lan4g0799 655 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 524 639 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lan4g0799 655 MobiDBLite consensus disorder prediction 463 483 - -
Lan4g0799 655 MobiDBLite consensus disorder prediction 97 117 - -
Lan4g0799 655 SUPERFAMILY DNA-binding pseudobarrel domain 114 252 IPR015300 -
Lan4g0799 655 ProSiteProfiles B3 DNA-binding domain profile. 123 225 IPR003340 GO:0003677
Lan4g0799 655 Gene3D - 542 634 - -
Lan4g0799 655 Gene3D - 120 224 IPR015300 -
Lan4g0799 655 MobiDBLite consensus disorder prediction 463 484 - -
Lan4g0799 655 Pfam AUX/IAA family 533 629 IPR033389 -
Lan4g0799 655 SUPERFAMILY CAD & PB1 domains 539 622 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0799 Lan-Chr4 10040796 10044889 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0799 14 633 B3 DNA Binding Superfamily AT4G23980 56.549 0.0 648
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lan4g0799 AUX_IAA 2.8e-10 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0799 4 10040796 10044889 Lan2g0375 2 3700952 3711026 LSH
Lan4g0799 4 10040796 10044889 Lan19g1111 19 18140811 18153903 LSH