Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0798 ATGGATCATCAACCACCAACCACCACCACTACCACCACCACTCAAAAATCTCACACCCTCAAAATCGGCACGCGCCACCCTCTATATCGTGGCGTGCGGAAGCGCCGATGGGGAAAATGGGTTTCTGAAATCCGTGAACCTCGCAAGAAATCACGCATATGGCTTGGTTCCTTCCCACTTCCAGAGATGGCAGCAAAAGCATACGACGTCGCAGCGTATTGCTTAAAAGGCCGCAAAGCACAGCTCAACTTTCCCGACGATGTAGAATGCCTTCCACTTCCGGCAACTTCTGCACCCAGAGACATTCAGGCTGCGGCAGCCAAGGCGGCGAATTTGATTAATAAAGAGAAAAGTAGCGACGGTGATAGTGGTGGTGATGATTTTTGGGGTGAGATTGAGTTGCCGGAGTTGGTTAATGGTGAATGTTGCTTGAGTTCTTCTTCTTCTTCTTCTCCGTCGTGGGCTTCCTCCGGTGGAGGTGATATCACGGTGTGGTTGTCGGAGGTTGAGATTTTGCAGCAGCAACCGTTCATGGCGTGTCTCTAA 546 0.5092 MDHQPPTTTTTTTTQKSHTLKIGTRHPLYRGVRKRRWGKWVSEIREPRKKSRIWLGSFPLPEMAAKAYDVAAYCLKGRKAQLNFPDDVECLPLPATSAPRDIQAAAAKAANLINKEKSSDGDSGGDDFWGEIELPELVNGECCLSSSSSSSPSWASSGGGDITVWLSEVEILQQQPFMACL* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0798 181 CDD AP2 27 87 IPR001471 GO:0003700|GO:0006355
Lan4g0798 181 MobiDBLite consensus disorder prediction 1 20 - -
Lan4g0798 181 Pfam AP2 domain 27 77 IPR001471 GO:0003700|GO:0006355
Lan4g0798 181 SMART rav1_2 28 91 IPR001471 GO:0003700|GO:0006355
Lan4g0798 181 Gene3D AP2/ERF domain 28 86 IPR036955 GO:0003700|GO:0006355
Lan4g0798 181 ProSiteProfiles AP2/ERF domain profile. 28 85 IPR001471 GO:0003700|GO:0006355
Lan4g0798 181 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF023 3 168 - -
Lan4g0798 181 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 3 168 - -
Lan4g0798 181 PRINTS Ethylene responsive element binding protein signature 29 40 IPR001471 GO:0003700|GO:0006355
Lan4g0798 181 PRINTS Ethylene responsive element binding protein signature 67 87 IPR001471 GO:0003700|GO:0006355
Lan4g0798 181 SUPERFAMILY DNA-binding domain 28 87 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0798 Lan-Chr4 10029644 10031103 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0798 5 181 AP2-EREBP Transcription Factor Family AT1G01250 56.545 4.39e-58 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lan4g0798 AP2 2.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0798 K09286 - gmx:100819971 220.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0798 4 10029644 10031103 Lan11g0643 11 5354903 5355606 PCT
Lan4g0798 4 10029644 10031103 Lan9g0985 9 16690506 16691211 PCT
Lan4g0798 4 10029644 10031103 Lan2g0737 2 15545684 15546411 PCT
Lan11g0643 11 5354903 5355606 Lan4g0798 4 10029644 10031103 PCT
Lan9g0985 9 16690506 16691211 Lan4g0798 4 10029644 10031103 PCT
Lan2g0737 2 15545684 15546411 Lan4g0798 4 10029644 10031103 PCT