Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0796 ATGAAGATGTTATGGAGTGAAAACGAAAAAGCCATGGTTGCTAGTGTTCTAGGACCAAAAGCTTTGAATTTTTTGATTTCAAATTCATTGCCCAATGAGATTATCTTAATGGCTATTGGTAGTGATGAGAGTCTTCAGAACAAGCTTTCTGATATTGTTGAGAGACCCAATGTTTCAAATTTCAGCTGGAACTATGCAATTTTCTGGCAACTTTCTCAGTCAAAATCTGGTGATTGGGTTCTTGGTTGGGGTGATGGGTGTTGTAGGGAACCAAATGAAGTAGAAGAACACATTGTAAGAAGGGTTCTAAGGCCTTGTTTGGATGATGCTGATGATTTGAATATGCAACAAAGTTTGAGGAAAAAGGTGCTTCAGAAGCTTCACACAACTTTTGGTGGTTCAGATGAAGAGAACTATGTTATTGGTCTTGACCATGTTACTGACACAGAGATGTTCTTTCTTGCTTCAATGTACTTTTCTTTCCCTAAGGGAAGTGGTGGACCAGGTAAGTGTTTTGAATCTGGGAAGCATGTGTGGCTCTTGGATGCATTGAATGATAATGATTCAGATTACTATGTGAGATCTTACTTGGCTAATTCTGCTGGATTTCGAACCATTGTTTTAGTGCCTACTGATTTTGGAGTTGTGGAGTTAGGTTCAGTGAGATTGTTGCCTGAGAACTTTGAATTGTTAGAAGCCATAAAAACTGTGTTTTCGTCGTTATATTCATACCCTAAGGTTAATGTTAAGCCAATTTCACCTTTACCATTGACTGTTGTTACTGAAAAGAGAGATGAGAAAAATGATGTATTTCATGGTTTTCCAATTGGAGGTAATAAGAATAAGGTAGATGGAGTCTCGAAAGTTTTTGTGGACCCTTGTCCTGGTCGCACTCAATTTAGGGAGAAACTTGCTATTCGGAAAGTGGAGGAGAGGCCATGGGGAGACTGCGGTTACCCCGATGGGAGTGCTAGTAAGTTCCTTAATGCTGCTCATAGAAATGGTCTGCATGGATCAAGTTGGGCAGGGAATCAAGGTATGATGAGGCAGCCTAGTCCGGCCGAAGTTTTCGCTAATGGCGTGAGACAGGATTTTAGGCTTAACAACTATCAACCTCAAAGGCAAATGCAAATTGATTTCTCCGGAGCTACTTCGAGGCCTTTAGTGAGATCAGTTGTTAGTGAATTAGAATTATCTGATGCTGAGGCCTCTTTCAAGGAGGAGAAACCGGGCGTAATCGATGAAAGGAGGCCGAAGAAACGTGGCAGGAAGCCTGTGAATGGAAGGGATGAACCACTCAATCATGTGGAGGCAGAGAGGCAAAGGCGCGAGAAGCTGAACCAACGTTTCTATGCATTACGGTCTGTTGTTCCTAATATATCCAAGATGGACAAGGCATCGTTGTTAGGTGATGCCATTGCTTACATTAATGAGCTTCAGGCAAAACTCAAGATGTTGGAGCTTGAGAAAGAGAAATTTGGCAGCACTAAAAGGGATGAATATAAATCGGAAAATCATCAGAGTCGAGCTCCCGATGTGGATATTCAAGCTTCTCAAGACAAGGTAACTGTAAGGATGAGTTGCCCTCTTGACACTCATCCTGTTTCAAAAGTAATCCAAGCATTCAATAATGCTGAAATAAGTGTAGTAGAGTCGAAACTCGCCGCAGTGAACGATACCATCTTCCATGCATTTGTAATTAAATCGAAAGGGTCTGTACAGATTACAAAGGACAAGTTGATTGCAGCATTTTCCCAAGAATCCAACAACTCCTTAGAATTAGCATAA 1788 0.4116 MKMLWSENEKAMVASVLGPKALNFLISNSLPNEIILMAIGSDESLQNKLSDIVERPNVSNFSWNYAIFWQLSQSKSGDWVLGWGDGCCREPNEVEEHIVRRVLRPCLDDADDLNMQQSLRKKVLQKLHTTFGGSDEENYVIGLDHVTDTEMFFLASMYFSFPKGSGGPGKCFESGKHVWLLDALNDNDSDYYVRSYLANSAGFRTIVLVPTDFGVVELGSVRLLPENFELLEAIKTVFSSLYSYPKVNVKPISPLPLTVVTEKRDEKNDVFHGFPIGGNKNKVDGVSKVFVDPCPGRTQFREKLAIRKVEERPWGDCGYPDGSASKFLNAAHRNGLHGSSWAGNQGMMRQPSPAEVFANGVRQDFRLNNYQPQRQMQIDFSGATSRPLVRSVVSELELSDAEASFKEEKPGVIDERRPKKRGRKPVNGRDEPLNHVEAERQRREKLNQRFYALRSVVPNISKMDKASLLGDAIAYINELQAKLKMLELEKEKFGSTKRDEYKSENHQSRAPDVDIQASQDKVTVRMSCPLDTHPVSKVIQAFNNAEISVVESKLAAVNDTIFHAFVIKSKGSVQITKDKLIAAFSQESNNSLELA* 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0796 595 Coils Coil 469 496 - -
Lan4g0796 595 MobiDBLite consensus disorder prediction 404 441 - -
Lan4g0796 595 Gene3D - 426 495 IPR036638 GO:0046983
Lan4g0796 595 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 430 492 IPR036638 GO:0046983
Lan4g0796 595 PANTHER ABA-INDUCIBLE BHLH-TYPE TRANSCRIPTION FACTOR 4 589 - -
Lan4g0796 595 Pfam Helix-loop-helix DNA-binding domain 434 480 IPR011598 GO:0046983
Lan4g0796 595 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 45 238 IPR025610 -
Lan4g0796 595 PANTHER MYC 4 589 IPR045084 GO:0003700|GO:0006355
Lan4g0796 595 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 430 479 IPR011598 GO:0046983
Lan4g0796 595 CDD bHLH_AtAIB_like 427 492 - -
Lan4g0796 595 SMART finulus 436 485 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0796 Lan-Chr4 9984300 9986535 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0796 2 593 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 49.097 0.0 528
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan4g0796 bHLH-MYC_N 9.3e-50 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0796 - - adu:107491937 722.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0796 4 9984300 9986535 Lan11g0644 11 5369475 5372531 PCT
Lan4g0796 4 9984300 9986535 Lan2g0738 2 15637191 15642337 PCT
Lan11g0644 11 5369475 5372531 Lan4g0796 4 9984300 9986535 PCT
Lan2g0738 2 15637191 15642337 Lan4g0796 4 9984300 9986535 PCT