Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0795 ATGGAAGAAGAACTTCGTTCAAAAATTGAAACAACGGTTTTGGAGATAGTGAAGCAATCCAATATGGAAGATACAACTGAGTTCACCATCCGAGTTGCTGCTTCTCACCGACTCGGTATTGATCTCTCTCTACCCGAACGGAAGCAACTCGTTCGAACCGTTATTGAGTCTTATCTCGTTTCTGTTGCGGAGGGAATGAAGAACAACACGGTGGTACCGGAATCGAATGAGATTAAGGAGAATTCGATTGTTGTACAAGATTCCTCAGAGATGGTGGAGTTGAAGATGAAGAAGATCAAGAAGGAGGAGGAGAAATTAGAACGCATTGTTTGCCAGTTGTCAAACAGGAGGAATGTGTCCGTTGGAAATTTTAAAGGGTCAACATTGGTTTCAATAAGAGAGTTTTATTGTAGAGATGGAAAACAACTTCCTGGTCCTAAAGGGATAAGTTTATCTACTGAACAATGGTCAGCCTTCAAGAAGAGCGTACCTGCTATTGAGGAAGCTATCGCAAAGATGGAAAGAAAGATGGGGAAGATGCAATCAACACAATGCAGAAATGACCTTCATGGTAAGCAAAATGGAGATGTGTTAAATTCAGCTGTTGATGTTGCTCCTCTTGAGCTTGTCCCTATTGAGGTCATCCGTTTCGATGGGAAGAATTATCAATTCTGGGCTGAGCAGATGGAATTACTCTTGAAACAGTTGAAGATTGAATATGTGCTTACCGAACCATGCCCTAGTTCTACATTAGCAGAAAATTCAAGTGCTGAAGCCAAAGCTGCAGAAAAGAGACGGGTAAATGATGATTTACTGTGTCAGCGCAATATCTTGAACCATTTATCTGATCCTCTTTTCAATCAGTATGCTAACAGAAGAATGAGTGCTAAGGAGTTATGGGAAGAATTAAAACAGGTTTATATGTTTGAGAAGTTCGGAACAAAGAGATCTCTAGTGAAAACATATATCGAGTTTCAGATAGTTGAGGAGAAAGCAATTACTGAGCAAATTCAAGAACTTAATTGCATTGCAGACTCTCTTGGTGCTGCAGAAATGTCTATCGACGAGAACTTTCATGTAAGTGTCATCATCTCAAAGCTTCCATTATCCTGGAAGAATTTTTGCATCAAGCTAATGCGAGAGGAGCATCTACCCTTCTGGAAGTTAATGGAACGTGTAAGGATAGAGGAAGAATCCCGCAATGGAGTTAAACGATCAGGTGACCCTTCTAATCGTACTGGATTTCACCGAGCCAATAAATTCGAACCAAGACGAACCGAGAATAAGCAGCCACCAGGTAAGTATTTGAATAAGTCAGAAGCTAATAATGCTAAGAGCATAGCCTGTGATATCTGTGGCAAGAAAGGGCATCTTTCTAGAAATTGCTGGGGAAGAAAGTAA 1401 0.4061 MEEELRSKIETTVLEIVKQSNMEDTTEFTIRVAASHRLGIDLSLPERKQLVRTVIESYLVSVAEGMKNNTVVPESNEIKENSIVVQDSSEMVELKMKKIKKEEEKLERIVCQLSNRRNVSVGNFKGSTLVSIREFYCRDGKQLPGPKGISLSTEQWSAFKKSVPAIEEAIAKMERKMGKMQSTQCRNDLHGKQNGDVLNSAVDVAPLELVPIEVIRFDGKNYQFWAEQMELLLKQLKIEYVLTEPCPSSTLAENSSAEAKAAEKRRVNDDLLCQRNILNHLSDPLFNQYANRRMSAKELWEELKQVYMFEKFGTKRSLVKTYIEFQIVEEKAITEQIQELNCIADSLGAAEMSIDENFHVSVIISKLPLSWKNFCIKLMREEHLPFWKLMERVRIEEESRNGVKRSGDPSNRTGFHRANKFEPRRTENKQPPGKYLNKSEANNAKSIACDICGKKGHLSRNCWGRK* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0795 466 Coils Coil 89 109 - -
Lan4g0795 466 PANTHER PBF68 PROTEIN 1 461 - -
Lan4g0795 466 Pfam gag-polypeptide of LTR copia-type 270 401 - -
Lan4g0795 466 Gene3D Transcriptional Coactivator Pc4; Chain A 100 178 IPR009044 GO:0003677|GO:0006355
Lan4g0795 466 ProSiteProfiles Zinc finger CCHC-type profile. 449 462 IPR001878 GO:0003676|GO:0008270
Lan4g0795 466 Pfam DEK C terminal domain 6 59 IPR014876 -
Lan4g0795 466 SUPERFAMILY Retrovirus zinc finger-like domains 431 462 IPR036875 GO:0003676|GO:0008270
Lan4g0795 466 SUPERFAMILY ssDNA-binding transcriptional regulator domain 110 172 IPR009044 GO:0003677|GO:0006355
Lan4g0795 466 MobiDBLite consensus disorder prediction 415 431 - -
Lan4g0795 466 PANTHER PBF68 PROTEIN 1 461 - -
Lan4g0795 466 Pfam Transcriptional Coactivator p15 (PC4) 111 161 IPR003173 GO:0003677|GO:0006355
Lan4g0795 466 MobiDBLite consensus disorder prediction 398 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0795 Lan-Chr4 9978267 9981966 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Coactivator p15 Lan4g0795 Retrotran_gag_2 7.1e-15 CL0523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0795 - - lang:109345725 913.294