Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0792 ATGAAGAATCAAATTTACAATCTGAAGCGCTGCAATCTTCATCAACAAAACGACACTCTTCAGAAGAAGCAAAAAATCAATCACTTCACCGACACAACTAATTCAAATTCAGAAGATTCTCCTCAACCTCAATTGTTGCGTTCATCACGTGGTCGACGCAGGATTCTACCTTCCAGGTTCAATGATTCAGTCCTTCATACATTGAATTTCAATTCAAGTTTGAAAATTGATGATAGTAATTTGGAGCAAGGGAATAGAGATGAATGTAGCTCAAAAAATTCAACTGTGTTGTCATATTCTGATGAAAAATTGAAGGATGATTTAGATTTGGTTGGGTTTCAGAAGCATGCTAGCATTAAAACGACACTTAATCGGAATCGTTTGTCATTGGTGAAAACGGATAGTTCAATATCAGGGATCGGTTTTCAGGGTTTAGATCAAAAGGGTAGTAACGGAAATGGAAAAAGGAGTAAGGAGATTTATAAATTGGAGGATTTTGCTTTGGGTGATATTGTTTGGGCAAAATGTGGGAAGCGATATCCAGCTTGGCCAGCTGTTGTGATTGATCCAATCTTGCAAGCTCCCAAATCCGTATTGAATTGCTGTGTTCCTGGTGCAATTTGTGTTATGTTTTTCGGTTATTCGAAGAACGGAAAGCAAAGGGACTATGCATGGGCGAAGCAGGGAATGATATTCCCATTCTTGGAATTCATGGATAGATTCCAGGGGCAGACCCAATTGCACAAGTGCAAACCACGTGACTTTCATGTGGCAATAGAGGAGGCAATTTTGACAGAAGATGGCATTTTGGACTTGCACTTTGGAGCTAAGCAAATTACAAATGTTGATGCTCATCCCAGTGGCCTTATGGAGGGTACAGGATCCACAGTTGACCAGGAGCGTTATGACCAACACCAGAACACTACATCTTGTGCTAGCTGCGGTTTGATGTTGCCGTGCAAAACCATAAAGAGGAATAAGGATTCAAGTTGCCAACCTCAACCTTACTGTAAATATTGTGCAAAGTTACAAAAATCAAAACAATATTGTGGCATTTGCAAAAAGATTTGGCACCATTCAGATGGAGGGGACTGGGTATGCTGTGATGGTTGTAATGTTTGGGTTCATGCTGAGTGCGACAATATTTCCAGCAAACTTTTCAAGGATATGGAAAATATAGATTACTTTTGCCCAGATTGCAAGGGAAAGTTTAACTGTAAATTATCAGAAACACAAACATCCGATTTAAAAATTAGATCAATAGAGAATAGCCAGATGCAGATGCCTATGATACCTGAAAAGCTAGCGGTAGTGTGCAATGGCATGGAAGGAATTTACATTCCAAAGCTTCATTTAGTTATGTGCAAGTGTGAATTCTGTGGTTCAAGGAAGCAGAAACTGACTGATTGGGAACGACATACGGGTTGCAAAGCGAAAAAATGGAAATATAGCGTGAAAGTGGAAAGCACAATGCAACCACTAATAAATTGGATCAGGGAACACAATTTACAAGCTGGAACTTGCCTGCAGTTAGATCAGCAGCAGGTGATTTCCTTTTTGCAAGAGAAGTATGAGCCAGTTTATGTAAAATGGACAACAGAAAGATGTGCCATTTGCAGATGGGTTGATGATTGGGAAGATAACAAAATTATCATCTGTAACAGGTGCCAAATTGCTGTCCATCAAGAATGCTATGGGGCAAAGAATGTTCAGGATTTTACTTCTTGGGTTTGTAGAGTCTGTGAAACTCCTGATGTTGAGAGAGATTGTTGCCTCTGTCCAGTAAAAGGTGGTGCTCTAAAGCCAACTGATATTGAGATGTTGTGGGTTCATGTAACATGTGCTTGGTTTCGGCCTGAAGTTCTTTTCCAAAACCATGAGGCTATGGAACCTGCCTCTGGAATCCTTATAATTCCTCCTGATTCCTTTTCGAAGACCTGTGTCATCTGCAAACAAAGGCATGGTTCCTGTATAAGTTGTTGCAAGTGTGCTACATATTTTCATGTGATGTGTGCTTCAAGAATGGGATACACCATGGAAATGCATTCTGCAGAGAATAATGGGACTCAACAATCAAAGATGCTAATGTATTGTGCATTTCACAGGACCCCAAAGCCAGATTCAGTACTGGTTGTACATACACCCCTCGGGGTATTCTCTCCCAAAAATTTAATTCAAAATCACAAGGGATGCTTCAGGGGGTCAAGGCTGGTTTCATCAAAGAATGTAGAACTCCCTGAATCTCCAACCTCTCAAAGTCTTGAGGTTGAGCCACTTTCTGCTGCCAGGTGTTGTGTGAATGGGAAGTCTCTCAATAAGAGGGAAGATGTTCCAATAATTCACTTGCTGGGCGGACCAAACCTTCATTCTCTAACAGCAATAAGTCAATTGAACAGCAATAATAATAAGGATGCTGAGGAATTTTCTTCCTCAAAGGAACGTCTTTGCCATTTACAGAAAACGGAAAAACGCAGACTTTGCTTTGGAAAATCGGGTATTAATGGATGGGGCCTCTTTGCTCGCAGAGATATACAAGAAGGAGAAATGGTTGTTGAGTATCGTGGTGAGCAGGTAAGGCGCAGTGTTGCTGATCTGAGGGAAGCAATGTACCGTTCAGAAGGCAAAGCTTGTTATCTGTTCAAGATTAGTGATGAAGTGGTAATCGACGCAACAGATAAGGGCAATATTGCACGATTAATAAACCATTCTTGCATGCCAAACTGCTATGCAAGAATTATGTGTTTGGGTGATCAGGAAAGTCGGATCGTTCTCATTGCCAAGACCAATGTTTCTGCCGGTGAAGAACTCACGTATGATTACTTGTTCGATCCAGATGAGGGGGATGAACTGAAAGTTCCCTGTCTGTGTAGAGCCCCCAACTGTAGAAAATTTATGAACTAG 2901 0.4092 MKNQIYNLKRCNLHQQNDTLQKKQKINHFTDTTNSNSEDSPQPQLLRSSRGRRRILPSRFNDSVLHTLNFNSSLKIDDSNLEQGNRDECSSKNSTVLSYSDEKLKDDLDLVGFQKHASIKTTLNRNRLSLVKTDSSISGIGFQGLDQKGSNGNGKRSKEIYKLEDFALGDIVWAKCGKRYPAWPAVVIDPILQAPKSVLNCCVPGAICVMFFGYSKNGKQRDYAWAKQGMIFPFLEFMDRFQGQTQLHKCKPRDFHVAIEEAILTEDGILDLHFGAKQITNVDAHPSGLMEGTGSTVDQERYDQHQNTTSCASCGLMLPCKTIKRNKDSSCQPQPYCKYCAKLQKSKQYCGICKKIWHHSDGGDWVCCDGCNVWVHAECDNISSKLFKDMENIDYFCPDCKGKFNCKLSETQTSDLKIRSIENSQMQMPMIPEKLAVVCNGMEGIYIPKLHLVMCKCEFCGSRKQKLTDWERHTGCKAKKWKYSVKVESTMQPLINWIREHNLQAGTCLQLDQQQVISFLQEKYEPVYVKWTTERCAICRWVDDWEDNKIIICNRCQIAVHQECYGAKNVQDFTSWVCRVCETPDVERDCCLCPVKGGALKPTDIEMLWVHVTCAWFRPEVLFQNHEAMEPASGILIIPPDSFSKTCVICKQRHGSCISCCKCATYFHVMCASRMGYTMEMHSAENNGTQQSKMLMYCAFHRTPKPDSVLVVHTPLGVFSPKNLIQNHKGCFRGSRLVSSKNVELPESPTSQSLEVEPLSAARCCVNGKSLNKREDVPIIHLLGGPNLHSLTAISQLNSNNNKDAEEFSSSKERLCHLQKTEKRRLCFGKSGINGWGLFARRDIQEGEMVVEYRGEQVRRSVADLREAMYRSEGKACYLFKISDEVVIDATDKGNIARLINHSCMPNCYARIMCLGDQESRIVLIAKTNVSAGEELTYDYLFDPDEGDELKVPCLCRAPNCRKFMN* 967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0792 966 Pfam PWWP domain 169 263 IPR000313 -
Lan4g0792 966 ProSiteProfiles SET domain profile. 824 941 IPR001214 GO:0005515
Lan4g0792 966 CDD PHD_TCF19_like 350 400 - -
Lan4g0792 966 SUPERFAMILY FYVE/PHD zinc finger 533 598 IPR011011 -
Lan4g0792 966 MobiDBLite consensus disorder prediction 30 47 - -
Lan4g0792 966 ProSiteProfiles Zinc finger PHD-type profile. 533 584 IPR019787 -
Lan4g0792 966 ProSiteProfiles Extended PHD (ePHD) domain profile. 587 702 IPR034732 -
Lan4g0792 966 CDD PHD_ATX3_4_5_like 535 581 IPR042011 -
Lan4g0792 966 ProSiteProfiles Post-SET domain profile. 950 966 IPR003616 -
Lan4g0792 966 SMART set_7 824 947 IPR001214 GO:0005515
Lan4g0792 966 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 1 966 - -
Lan4g0792 966 SUPERFAMILY Tudor/PWWP/MBT 164 267 - -
Lan4g0792 966 Gene3D - 159 267 - -
Lan4g0792 966 ProSiteProfiles PWWP domain profile. 168 237 IPR000313 -
Lan4g0792 966 MobiDBLite consensus disorder prediction 30 51 - -
Lan4g0792 966 Pfam PHD-finger 349 402 IPR019787 -
Lan4g0792 966 SUPERFAMILY SET domain 817 963 IPR046341 -
Lan4g0792 966 Pfam SET domain 835 940 IPR001214 GO:0005515
Lan4g0792 966 Pfam PHD-finger 548 582 - -
Lan4g0792 966 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 529 584 IPR013083 -
Lan4g0792 966 SUPERFAMILY FYVE/PHD zinc finger 346 405 IPR011011 -
Lan4g0792 966 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 585 704 IPR013083 -
Lan4g0792 966 PANTHER PHD FINGER PROTEINS 1 966 - -
Lan4g0792 966 ProSiteProfiles Zinc finger PHD-type profile. 347 403 IPR019787 -
Lan4g0792 966 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 966 IPR025780 -
Lan4g0792 966 SMART PHD_3 535 582 IPR001965 -
Lan4g0792 966 SMART PHD_3 349 401 IPR001965 -
Lan4g0792 966 SMART PHD_3 646 702 IPR001965 -
Lan4g0792 966 SMART PostSET_3 950 966 IPR003616 -
Lan4g0792 966 Gene3D SET domain 762 966 IPR046341 -
Lan4g0792 966 ProSitePatterns Zinc finger PHD-type signature. 536 581 IPR019786 -
Lan4g0792 966 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 343 404 IPR013083 -
Lan4g0792 966 Pfam PHD-zinc-finger like domain 589 701 - -
Lan4g0792 966 CDD SET_SETD1-like 813 962 - -
Lan4g0792 966 SMART PWWP_4 166 235 IPR000313 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0792 Lan-Chr4 9944443 9952309 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0792 305 374 EF-hand Containing Proteins AT5G28340 59.155 2.86e-21 96.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lan4g0792 zf-HC5HC2H_2 4e-29 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0792 - - gmx:100793624 1391.33