LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lan4g0777	ATGCAACTCAACTCATTCAACTTCCAGCACGATGGTGATGATTTTGATGAAATTGGAAATGATACCAATAATAATAATAGTAATGAAGACTTGATGGTTGGTTCTTCTACTTCTCTCCATTGCCTCTCCCGAGAGATGCTTCATATGAGTTTGACGGATCATCATCATCATCATCATCATAATAGCGATATCATTCATGGAACTGAAGATGAAGATGTTACCTATATTCCACAACATGTACTTGGAACTGGCTCTTTTGGTCTTGTTTTCCAAGCTAAATCTACACTAACTGGAGAGATTGTAGCCATCAAGAAGGTTCTCCAGGACAACCGCTACAAGAATCGAGAGTTACAGATTATGCAAATGCTCCATCATCCAAATATTGTTGCCCTTACCCATTCTTTCTTTTCAACTACTCACAAACAACAACTTTACTTGAATCTTGTCCTTGAATATGTTCCTCAAACTCTCAACCGTATTGCAAGGAACTATTCCAGGATCAACCACCACATGCCTTTAATCTATGTAAAGCTTTATTCCTACCAGATTTGCAGGGCCCTTGCTTATATTCATAATTGCATTGGTATATGTCATCGTGATATCAAACCTCAAAATCTTCTCGTGAACCCACACACTCATCAGCTGAAACTTTGTGATTTTGGGAGTGCAAAAGTGTTGGTGAAAGGAGAGCCTAATGTTTCTTACATCTGTTCAAGATACTATCGTGCTCCCGAACTTATATTTGGTGCCACTGAATATACAACTGCCATAGATATATGGTCAACTGGATGTGTAATGGCTGAATTATTTCTTGGACAGCCTTTGTTTCCTGGAGAGAGTGGAGTTGATCAACTAGTTGAAATCATAAAGGTTTTGGGAACTCCAACCAGGGAAGAGATAAAGTGCATGAACCCAAATTATACTGAATTTAAGTTTCCGCAGATAAAACCTCATCCATGGCACAAGGTCTTTCAGAAACGTTTACCCCCAGAAGCAGTGGACCTTATCTGTAGGTTCTTTCAGTACTCTCCCAATTTGAGATGCACTGCTTTGGAAGCTTGCATTCATCCCTTCTTTGATGAATTAAGGGACCCAATAACCCGCCTTCCTAATGGCCGCCCACTTCCTCCGCTGTTTAATTTTAAACCCGAGGAACTATCTGGCATTCCCCCTGATGTCATCAATCAGCTTATTCCTCAACATGCTCGTAAACACAACTTATTTATGGCTTTGCACACCTAG	1242	0.401	MQLNSFNFQHDGDDFDEIGNDTNNNNSNEDLMVGSSTSLHCLSREMLHMSLTDHHHHHHHNSDIIHGTEDEDVTYIPQHVLGTGSFGLVFQAKSTLTGEIVAIKKVLQDNRYKNRELQIMQMLHHPNIVALTHSFFSTTHKQQLYLNLVLEYVPQTLNRIARNYSRINHHMPLIYVKLYSYQICRALAYIHNCIGICHRDIKPQNLLVNPHTHQLKLCDFGSAKVLVKGEPNVSYICSRYYRAPELIFGATEYTTAIDIWSTGCVMAELFLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKPHPWHKVFQKRLPPEAVDLICRFFQYSPNLRCTALEACIHPFFDELRDPITRLPNGRPLPPLFNFKPEELSGIPPDVINQLIPQHARKHNLFMALHT*	414

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lan4g0777	413	SMART	serkin_6	75	359	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lan4g0777	413	MobiDBLite	consensus disorder prediction	1	32	-	-
	Lan4g0777	413	PANTHER	GLYCOGEN SYNTHASE KINASE-3 ALPHA	32	410	-	-
	Lan4g0777	413	Pfam	Protein kinase domain	78	359	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lan4g0777	413	SUPERFAMILY	Protein kinase-like (PK-like)	75	385	IPR011009	-
	Lan4g0777	413	ProSitePatterns	Protein kinases ATP-binding region signature.	81	105	IPR017441	GO:0005524
	Lan4g0777	413	ProSiteProfiles	Protein kinase domain profile.	75	359	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lan4g0777	413	CDD	STKc_GSK3	71	362	IPR039192	-
	Lan4g0777	413	Gene3D	Transferase(Phosphotransferase) domain 1	155	403	-	-
	Lan4g0777	413	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	196	208	IPR008271	GO:0004672\|GO:0006468
	Lan4g0777	413	PANTHER	SHAGGY-RELATED PROTEIN KINASE DELTA-RELATED	32	410	-	-
	Lan4g0777	413	Gene3D	Phosphorylase Kinase; domain 1	62	154	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lan4g0777	Lan-Chr4	9799636	9802562	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lan4g0777	81	362	Core Cell Cycle Gene Families	AT1G76540	35.811	5.81e-56	185

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_GSK	Lan4g0777		Pkinase	1e-63	CL0016