Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0748 ATGGGAGACGCTGCTTCTTGCGGATTGGCTCATCGACTAGATATTCACCAATTACAGATTGAAGCCCAGCACCGGTGGCTGCGACCTTCTGAGATTTCTGAAATTCTTCGTAATTATCGCATGTTTCACATTACACCAGAACCTCATAACAGGCCACCGAGTGGTTCACTTTTTATTTTTGATCGTAAGGTTTTGAGATACTTTAGAAAGGATGGGCATAATTGGAGAAAGAAAAAAGACGGAAAAACTGTGAAAGAAGCTCATGAAAAGTTGAAGGTGGGAAGTATTGATGCATTACATTGCTACTATGCCCATGGAGAAGATAATGAAAATTTTCAGAGGCGAAGCTACTGGATGCTTGAACCAGATATGATGCACATAGTTTTTGTTCACTACTTGGAAGTTAAGGGTAACAAGACAACTATTGGAGGAATTAGAGAAGGTGATGACGTCACATCAGATTCCCAAAGGGTCACCTCTCCATCATCTGGATTTCCCTCAAATTATAGCTCTGTGCCTTCACCGAGTACAGATTCCATGAGCCCAACTAGCAGCCTGACATTTTCACGTGAAGATGCCGATTCTGAGGATATTCACCAAGGAAGTTCTGGATTACGCCCATTACATGAGTCACAACATAAGGGGAATGGTATTCTGGCGGACAAGCTTAATGCTGGTTTCAACAGTTCATATCTTCTTCATCCCATTTCAGGTGATCATGGGTTGTCATCAACTTCTGGAACAGATTATATCCCATTTGCTCCAGGGGATAAATTTAGAGGAAATGATACTACTTACATTGATGGTCAGAAAGCACATGGCATGGCATCCTGGAACAATGTCTTGGAGCAATGTACCACGGAATTGCATACTGATCCTTCTCTTATATCATTTCCTTCCACCCCATCCGGTTTGGTGGGTAACATTCTTGATCAAGAACATACCATTTTCAGTGACCTTTTAGCGGGTAGAAGTGGCCTCAGTGAGGAGGCAGGGAGCTCTCGGTCTCTTCAATCAAATTGGCAGATTCATTTTCAAGACAATTCAGGGAACTTGCCAGCCATAGCCCAATCATTGAGTTTGGATTTTGGATCTGGATATAGCATTGATTTACTAGGGAATGAAACTCATGTAAGTTCTGAAATTGCTCCCAACCTGTTTAGTTTTCATGGTACGCAAAAAGAGCAGTCTGTGCAGCAATACTATCCAGAACAGCATGCAGACAGACAATCTCAACTTGCACTAAAATCCAATTCTGTGAATAAAGTTCCTGGTGAAGAAAGTATCAACTATGCCTTCACTGTGAAGCGCACATTATTGGATCGAGATGAAAGCCTGAAGAAGGTTGATAGCTTCTCTCGGTGGGTTAGTAAAGAACTTGGAGAGGTTGATGATTTGAATATGCAGTCCACACCTGGTATTTCATGGAGCACGGATGAATGTGGGCATGTCATGGATGATGCCTCATTGAGTCCATCCCTTTCCCAGGATCAGCTGTTTAGCATAAATGACTTTTCACCTAAATGGGCTTATGCTGAATCAGAAACTGAGGTGTTGATAATTGGAGCATTTTTGAAGAGTCAACCTGAGGTGACAACCTGTAACTGGTCCTGTATGTTTGGGGAAGTGGAGGTTCCTGCTGAGGCTTTAGCTAATGGAATTCTGTGCTGTCAAGCTCCATCTCTTAAGATTGGACGGGTTCCTTTCTATGTTACATGTTCCAATAGGTTAGCTTGTAGTGAGGTGCGGGAATTTGATTACAGAGAGGGCTTTTCTGCAAATGTAGATTTTGCAGGTATCTATGACAGTTCATCTGATATGCTGCTTCATTTGCAACTGGAGGAGTTGCTTTCTTTAAAACCAGTGCAGCCTTCAAATCTAACTTTTGAGGGTTATATGGAGCAAAGAAGCATAATTTTGAAGCTTATTTCGCAGAGGGAGGAAGAGGAATATTCAAGTAACGAAGAGCCCACTCTCGAGATGGGTATCTCACAACAAAAGGTTAAGGAGCATCTTCACAGGCAGGTTAAAGAGAAGCTGTATTCATGGCTTCTTCACAAAGCAACTGACAGTGGTAAAGGGCCAAATATCTTAGACAAGAATGGGCAGGGTGCGTTACATTTAGCTTCTGCTCTTGGTTATGACTGGGGCATAAAACCAATTTTAACTGCTGGAGTTAATATCAATTTCCGCGATGTGAATGGTTGGACAGCTCTACATTGGGCTGCATTTTGTGGCAGAGAGCGGACAGTTGCTGTCCTTGTCTCCATGGGTGCGGATTCTGGAGCATCGACAGATCCATCTCCAACATTTCCTTCAGGTAGAACACCTGCAGATCTTGCATCTAGCAACGGGCACAAAGGAATCTCTGGTTTTCTTGCTGAGTCTTTATTAACAGGCCACCTTGAATCTCTCACAATGGATGATCAACACAAAGGTGGTAGGCAACAACTTTCAGGATTGAACATAGTGCAGACAGCTTCCGAACGAACTGCAACACCTGTGTTCTATGGTGATATGCCAGATGCCCTCAGTCTCAAGGATTCTCTTACCGCTGTCCGTAATGCTATACAAGCTGCTGATCGTATACATCAAGTATTCAGAATGCAGTCATTTCAGAGAAAGCAATTAAATCAGTATGAAGATGAAGATGAGCTTGGGTTGGCAGAGCAGCAAGCTGTTTCCCTTATAGCTTCTAAGTCATGCAAATCTGGACAAGGAGATGGTTTAGCCAATGCTGCTGCAACACAAATACAGAAAAAGTTTCGCGGTTGGAAGAAGAGACAAGAGTTCTTGTTCATTCGTCAGAGAATTGTGAAAATCCAGGCCCATGTTAGAGGTCACCAGGTAAGGAAGAAGTATGGAAATATCATCTGGTCTGTGGGAATACTGGAGAAGGTTATATTACGCTGGAGGCGCAAGGGCAGTGGTTTACGTGGATTTCGACAAGATGCCCTTCCTAAGACTCCCAGCCAACAAAGTGATCCTGTGAAAGAGGATGATTACGATTTTCTCAAGGAAGGAAGGAAACAAAGTGAGGAAAAGTTCCAAAAGGCCCTTTCAAGGGTGAAGTCCATGGTTCAGTATCCAGAGGCACGGGCTCAATACCGGCGACTGCTGAATGTCGTTGAGGACGTCCGTCAAACCAAGACATGCAATATGGATCTGGTCAATGCTGAAGAGACAGTTGATAGTGTGGAGGAGTTGATTGATATTGATATGCTTTTAGATGATGATAATTTCATTCCTATAGCATTTGATTGA 3264 0.4301 MGDAASCGLAHRLDIHQLQIEAQHRWLRPSEISEILRNYRMFHITPEPHNRPPSGSLFIFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSIDALHCYYAHGEDNENFQRRSYWMLEPDMMHIVFVHYLEVKGNKTTIGGIREGDDVTSDSQRVTSPSSGFPSNYSSVPSPSTDSMSPTSSLTFSREDADSEDIHQGSSGLRPLHESQHKGNGILADKLNAGFNSSYLLHPISGDHGLSSTSGTDYIPFAPGDKFRGNDTTYIDGQKAHGMASWNNVLEQCTTELHTDPSLISFPSTPSGLVGNILDQEHTIFSDLLAGRSGLSEEAGSSRSLQSNWQIHFQDNSGNLPAIAQSLSLDFGSGYSIDLLGNETHVSSEIAPNLFSFHGTQKEQSVQQYYPEQHADRQSQLALKSNSVNKVPGEESINYAFTVKRTLLDRDESLKKVDSFSRWVSKELGEVDDLNMQSTPGISWSTDECGHVMDDASLSPSLSQDQLFSINDFSPKWAYAESETEVLIIGAFLKSQPEVTTCNWSCMFGEVEVPAEALANGILCCQAPSLKIGRVPFYVTCSNRLACSEVREFDYREGFSANVDFAGIYDSSSDMLLHLQLEELLSLKPVQPSNLTFEGYMEQRSIILKLISQREEEEYSSNEEPTLEMGISQQKVKEHLHRQVKEKLYSWLLHKATDSGKGPNILDKNGQGALHLASALGYDWGIKPILTAGVNINFRDVNGWTALHWAAFCGRERTVAVLVSMGADSGASTDPSPTFPSGRTPADLASSNGHKGISGFLAESLLTGHLESLTMDDQHKGGRQQLSGLNIVQTASERTATPVFYGDMPDALSLKDSLTAVRNAIQAADRIHQVFRMQSFQRKQLNQYEDEDELGLAEQQAVSLIASKSCKSGQGDGLANAAATQIQKKFRGWKKRQEFLFIRQRIVKIQAHVRGHQVRKKYGNIIWSVGILEKVILRWRRKGSGLRGFRQDALPKTPSQQSDPVKEDDYDFLKEGRKQSEEKFQKALSRVKSMVQYPEARAQYRRLLNVVEDVRQTKTCNMDLVNAEETVDSVEELIDIDMLLDDDNFIPIAFD* 1088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0748 1087 Pfam Ankyrin repeats (3 copies) 677 760 IPR002110 GO:0005515
Lan4g0748 1087 SMART iq_5 933 955 IPR000048 GO:0005515
Lan4g0748 1087 SMART iq_5 910 932 IPR000048 GO:0005515
Lan4g0748 1087 MobiDBLite consensus disorder prediction 761 780 - -
Lan4g0748 1087 Gene3D Immunoglobulins 495 590 IPR013783 -
Lan4g0748 1087 Pfam IPT/TIG domain 502 580 IPR002909 -
Lan4g0748 1087 MobiDBLite consensus disorder prediction 144 212 - -
Lan4g0748 1087 MobiDBLite consensus disorder prediction 154 189 - -
Lan4g0748 1087 ProSiteProfiles Ankyrin repeat region circular profile. 734 760 - -
Lan4g0748 1087 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 7 1087 - -
Lan4g0748 1087 ProSiteProfiles Ankyrin repeat profile. 701 733 IPR002110 GO:0005515
Lan4g0748 1087 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
Lan4g0748 1087 Gene3D - 661 801 IPR036770 -
Lan4g0748 1087 Pfam IQ calmodulin-binding motif 936 954 IPR000048 GO:0005515
Lan4g0748 1087 Pfam IQ calmodulin-binding motif 913 931 IPR000048 GO:0005515
Lan4g0748 1087 ProSiteProfiles IQ motif profile. 934 958 IPR000048 GO:0005515
Lan4g0748 1087 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
Lan4g0748 1087 Gene3D - 911 957 - -
Lan4g0748 1087 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 1 7 1087 - -
Lan4g0748 1087 ProSiteProfiles IQ motif profile. 911 940 IPR000048 GO:0005515
Lan4g0748 1087 SMART CG_1_2 18 136 IPR005559 GO:0003677
Lan4g0748 1087 ProSiteProfiles Ankyrin repeat profile. 734 766 IPR002110 GO:0005515
Lan4g0748 1087 SMART ANK_2a 701 730 IPR002110 GO:0005515
Lan4g0748 1087 SMART ANK_2a 734 763 IPR002110 GO:0005515
Lan4g0748 1087 SMART ANK_2a 773 804 IPR002110 GO:0005515
Lan4g0748 1087 MobiDBLite consensus disorder prediction 761 782 - -
Lan4g0748 1087 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 912 960 IPR027417 -
Lan4g0748 1087 SUPERFAMILY Ankyrin repeat 689 795 IPR036770 -
Lan4g0748 1087 SUPERFAMILY E set domains 502 588 IPR014756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0748 Lan-Chr4 9665565 9674715 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0748 1 1068 CAMTA Transcription Factor Family AT5G64220 51.702 0.0 1014
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Lan4g0748 CG-1 9.7e-50 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0748 K21596 - gmx:100818124 1643.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0748 4 9665565 9674715 Lan19g1039 19 17621810 17631982 LSH
Lan4g0748 4 9665565 9674715 Lan16g0057 16 320988 329462 LSH