Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0742 ATGGCCACCGCCACCAACCCACAACCAGCACCACCACCACCACCGCCGTTGCAATCACTGAACTTAGAGTCTCTTTCTGCCATAGACTCAACGACTCTGTCACAATCTGAAATCCAAGCCCTCTCTCTCTGCTCTCTCTCCACTTTCGATCTTCGCTCTACGCGTCATAGCGTCACTCCCACAATCGATCCTTCCTTCTTCAACGAGAGCTCCGGTTCCCACCGACAAACCTACTCCCGCCGCCGCCGCCTCCCCGCAACCAACAACGTCGTCACCGATAGCAACACCGATAACCGCAGAATCATTGACTATTTAAAGCAGTTGATCAGGGAAGACCCGAAGTTCGATCAAATCGAGCTTCTCCAACCTTGTGTCCACACAGAGGTTGTTGCTCCGATTAGGGATCTGAGAGTGGGAACGGAGTTAGGGTTAGTGAGGAAGAGGAAGAGAGGGAGGAAGCCGAAACTGAAGGTGAATTTGGATGAGTGTTACAGAGGGATACATATTGTGAATAAGAACGGTGTTGCTATTGATTTTTTGGCGTTGGCGGTTGCGGAGGATCCGTATGCGGAGGAGTTGAGGAGAAGGACTGAGGGGTTGAAGAGTGAGGAGGAGCTATTTGGATTTTTGAGGGATTTGGAGGGGCAATGGGGAAGTACGAGGAAGAAGAGGAAGATTGTTGATGCTGCGAGTTTCGGTGATGTGTTGCCGCGTGGTTGGAAGCTTTTGCTTGGGTTGAAGAGGAAGGATGGCCGCGCTTGGATTTATTGCCGCAGATACTTGAGCCCTAGTGGACAGCAATTTCTGTCTTGCAAAGAAGTTTCTTCATATTTGCAGTCTCTTTCCAGTCATAGTGACACACAGTTACAAATCAGTCTTAGGAGTGAAAATATGCTGCAGGAACATACAATGACTATGAAGGAACATACAGACACTGTGACTACTGAAAACTCTGCAGGTTTTACCCTTGAGGATCAAAATCAACTGCAGATTGTTGTAGCTAACTCAGATGTGCCCTGTTTATCTGTTTCTAATGAACGATTGAAAGAAGTAGCCTTATTGGGGATTGACAATCTTGCTGATGTGCAAATACATGACCTATTTGAATGTCATAAATGCAACTTGAGGTTTGATGAGAAGGATACATACTTGCAGCACTTATTGTCTGTTCACCAGAGGACAACAAGGCGTTACCGACTTGGTTCTTCTGTTGGAGATGGAGTTATCATTAAAGATGGAAATTTTGAGTGCCAGTTCTGCCATAAGGTGTTTCAGGAAAGGCGTCGCTACAACGGTCACGTGGGGATCCATGTTAGGAATTATGTGAGGAAAGTTGAAGATTCACCAGGTCTGGCAAATGTCCAAAGGAGTGACAATTCTCCAGTCAGGGAGGACATACATTCAAGGATCTCTAAGATGGATGCTCTTATTGAAATTGCTCAAAACTCTATCATGGAACCCCATATTTCATCTGAACTTAGTTTAATTCCTGCTTTGGAAATTGCTGTTGACAACTTAGATCAAGACATAAACATGGAGTCTCCTATTGGTGAACAGCAAATGAAATATTGCCTGACGGGCAAAAATGTGGTTCAAGATTTAAATCAGCAAGATTATCCTCATTTACTTGGGGAAGGGGATGTAGAGGAAATTGATATTGACAACCAGGTTATAGATGCAAAGATGGTTACTTGTCTAGATAACATGGGTTTGTTTTCTGTAAATGAGCAAAATGCAAGTGTATCTGATATTTATATGGGAAAGGATGATGTGGAATTAACTGTTGAGGAGTTTGATCAGTATGGGATTGATTTGGAAAGAGGTTCTCAAAGCCCTTTATTTCATTTATCTGGCAATCACATGATACTTGAATCTGAGAAGAATGAAAACTCTGGCTGCACTAATGCCAAGTGGCAGTTTAAGCTTGATGGAGACAGTAGTAACAAGAGTGAGTTGAATATTGGTTTAGATGGCTGCATGGATGTACCTGTTAGCATCAATGTTCAATCGACAATGATGCCAGCTGCTTTAGAAAATGTGTTGCATTCAAGGGATTCTAAGCAATCTATATCCACAAAGCAATATTTGGATTGTTTTCCTTTGATCAGCTCAGATAAGGGTGGAAAGCAATTTTGCTCTGTTGACCATGAGCATGATAATCGGAAGGGTTTCCAGGAACTTGGGTTGGATGAAATAGGTCTTCAGTACAATTTTGCAAGCGGTCAGAATTCTCTTTCTCTGCTTGATGTGACAACTGAGTTGGCAAACGACACAGTGATGAAAGGGATGCATTCATCCCCAGTTCATTTTGAATCACAAGAAGTTACGATAAATATGGGTGGCAGAAATCAGCTTACGGCCGCGTGCGTGTGGTGTGGAATAGACTTTAACCATGATGCTGTTGATTCTGAAATACAGCCAGGTTCTGTTGGATTCATGTGTCCAGCATGTAAGGGAAAGATCTCTGGTCAATGA 2475 0.4356 MATATNPQPAPPPPPPLQSLNLESLSAIDSTTLSQSEIQALSLCSLSTFDLRSTRHSVTPTIDPSFFNESSGSHRQTYSRRRRLPATNNVVTDSNTDNRRIIDYLKQLIREDPKFDQIELLQPCVHTEVVAPIRDLRVGTELGLVRKRKRGRKPKLKVNLDECYRGIHIVNKNGVAIDFLALAVAEDPYAEELRRRTEGLKSEEELFGFLRDLEGQWGSTRKKRKIVDAASFGDVLPRGWKLLLGLKRKDGRAWIYCRRYLSPSGQQFLSCKEVSSYLQSLSSHSDTQLQISLRSENMLQEHTMTMKEHTDTVTTENSAGFTLEDQNQLQIVVANSDVPCLSVSNERLKEVALLGIDNLADVQIHDLFECHKCNLRFDEKDTYLQHLLSVHQRTTRRYRLGSSVGDGVIIKDGNFECQFCHKVFQERRRYNGHVGIHVRNYVRKVEDSPGLANVQRSDNSPVREDIHSRISKMDALIEIAQNSIMEPHISSELSLIPALEIAVDNLDQDINMESPIGEQQMKYCLTGKNVVQDLNQQDYPHLLGEGDVEEIDIDNQVIDAKMVTCLDNMGLFSVNEQNASVSDIYMGKDDVELTVEEFDQYGIDLERGSQSPLFHLSGNHMILESEKNENSGCTNAKWQFKLDGDSSNKSELNIGLDGCMDVPVSINVQSTMMPAALENVLHSRDSKQSISTKQYLDCFPLISSDKGGKQFCSVDHEHDNRKGFQELGLDEIGLQYNFASGQNSLSLLDVTTELANDTVMKGMHSSPVHFESQEVTINMGGRNQLTAACVWCGIDFNHDAVDSEIQPGSVGFMCPACKGKISGQ* 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0742 824 SUPERFAMILY DNA-binding domain 231 287 IPR016177 GO:0003677
Lan4g0742 824 ProSitePatterns Zinc finger C2H2 type domain signature. 417 437 IPR013087 -
Lan4g0742 824 Gene3D Classic Zinc Finger 364 456 - -
Lan4g0742 824 SMART c2h2final6 415 437 IPR013087 -
Lan4g0742 824 SMART c2h2final6 368 391 IPR013087 -
Lan4g0742 824 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 226 298 IPR001739 GO:0003677
Lan4g0742 824 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 8 19 824 IPR037472 -
Lan4g0742 824 PANTHER METHYL-CPG-BINDING DOMAIN PROTEIN 19 824 - -
Lan4g0742 824 Pfam Methyl-CpG binding domain 235 291 IPR001739 GO:0003677
Lan4g0742 824 ProSitePatterns Zinc finger C2H2 type domain signature. 370 391 IPR013087 -
Lan4g0742 824 ProSiteProfiles Zinc finger C2H2 type domain profile. 415 442 IPR013087 -
Lan4g0742 824 Gene3D - 216 320 - -
Lan4g0742 824 ProSiteProfiles Zinc finger C2H2 type domain profile. 368 396 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0742 Lan-Chr4 9632150 9639940 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan4g0742 MBD 0.00013 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0742 - - lang:109329666 1254.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0742 4 9632150 9639940 Lan16g0060 16 338503 343093 LSH