Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0738 ATGTCTCCTACAGTGAGAGACAGCGAGAAGAAGAAGAAGAATAATAATAATGAAGAAGATTTCATTATCAAACCCGAAACCCTAACTCCTTCAATCGACACATCAAATTGGCCAATCCTGTTAAAGAATTACGATCGTCTCAACGTGAGAACCGGTCACTACACTCCTCTCTCTTCCGGTTACTCCCCTCTGAAACGCCCTTTACCGGAATATCTGAAATACGGTGTTCTCAACCTTGACAAACCCGCAAACCCTTCCTCCCACGAGGTTGTCGCTTGGATCAAGCGCATCCTCCGCGTTGAAAAGACCGGCCACAGCGGTACCCTGGACCCTAAAGTCACCGGAAATTTAATCGTCTGTATCGATCGGGCGACGCGCCTTGTTAAGTCGCAGCAGGGGGCTGGGAAGGAGTATGTTTGCATTGCAAGGCTCCATTCTGGTGTCCCTGATGTGTCTAAGGTTGCTCGGGCACTTGAGACTCTTACCGGAGCTGTTTTTCAGCGTCCGCCGCTTATCTCCGCTGTTAAGAGACAGCTTAGGATAAGGACTGTTTATGAGAGTAAGCTTCTTGAGTATGATGCTGATAAGCATTTGGTTGTGTTTTGGATTTCGTGTGAGGCTGGTACTTATGTTAGGACAATGTGTGTTCATTTGGGTTTGATTCTTGGTGTGGGTGCTCATATGCAGGAACTTAGGAGGGTTAGGAGTGGGATTATGGGTGAGAAGGATAATATGGTTACAATGCATGATGTTATTGATGCTCAATGGGTTTATGATAATTATAGGGACGAGACTTATCTTCGGAGGGTTGTTATGCCGCTCGAGGTTTTGTTGACTAGCTATAAGAGATTGGTTGTTAAGGATTCTGCTGTTAATGCTATTTGTTATGGTGCCAAGCTCATGATTCCCGGGTTGCTTAGGTTTGAGAATGATGTCGAGGTTGGGGAGGAGGTTGTGCTTATGACTACTAAAGGTGAGGCTATTGCCCTTGGGGTTGCTGAGATGACTACTGCTGTTATGGCCACTTGTGATCATGGGGTCGTTGCTAAGATTAAGAGGGTTGTCATGGATAGGGATACTTATCCGAGGAAATGGGGTTTGGGACCGAAGGCTTCCATGAAGAAGAAGCTGATTGCTGAAGGGAAGCTTGATAAGCGTGGGAAGCCGACTGCTGATACTCCACAAGAGTGGCTAAGGAATGTTGTTTTGCCGACTGGTGGGGATAGTGTGGTTGCTAGCTTGGCTGCTGCTCCTGAAGGCGAGGCTGTGGGAGGAGAGAAGGAAAAGGTTAAGAAGGATGAAGATGGGGAAGGGCGTAAGAGAAAGAAAGATGAAAGCGGTGATGGGCTTGCTTCCCCTCCTGCTTCTAAGAAGAAGGTGAAGGTGGATCAAGATGAAGAGGCTGAAGTAGAGAAGTCAGAGAAGAAGAAAAAGAAGAAGAAAGATAAAGAGAATGGGGAAGCTGAAGCTTCAGACGAGGAGAAAAGTGTAAAAGAGAAGAAAAAGAAGCACAGGGAAAAGGTTGAAGATGGTTCTCCAGATTTAGACAAGTCTGAGAAGAAAAAGAAGAAGAAGGAGGAAAAGGTTGAAGATGGTTTGCCAGATGTAGACAAGTCTGAGAAGAAAAAGAAGAAGAAAAAAGACAAAGATAGTGAAGATAATGCCGCTGAAATTACGAATGAAAAGGATGATGGGAGTACTGATCGGAGTGAAAAGAAGCATAAGAAAAAGAAAAACAAAGGAGCTGATGAAGAGTAG 1758 0.4528 MSPTVRDSEKKKKNNNNEEDFIIKPETLTPSIDTSNWPILLKNYDRLNVRTGHYTPLSSGYSPLKRPLPEYLKYGVLNLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCIARLHSGVPDVSKVARALETLTGAVFQRPPLISAVKRQLRIRTVYESKLLEYDADKHLVVFWISCEAGTYVRTMCVHLGLILGVGAHMQELRRVRSGIMGEKDNMVTMHDVIDAQWVYDNYRDETYLRRVVMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDVEVGEEVVLMTTKGEAIALGVAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPKASMKKKLIAEGKLDKRGKPTADTPQEWLRNVVLPTGGDSVVASLAAAPEGEAVGGEKEKVKKDEDGEGRKRKKDESGDGLASPPASKKKVKVDQDEEAEVEKSEKKKKKKKDKENGEAEASDEEKSVKEKKKKHREKVEDGSPDLDKSEKKKKKKEEKVEDGLPDVDKSEKKKKKKKDKDSEDNAAEITNEKDDGSTDRSEKKHKKKKNKGADEE* 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0738 585 Gene3D Pseudouridine synthase 67 273 - -
Lan4g0738 585 Gene3D PUA domain 34 365 IPR036974 GO:0003723
Lan4g0738 585 MobiDBLite consensus disorder prediction 422 448 - -
Lan4g0738 585 MobiDBLite consensus disorder prediction 458 585 - -
Lan4g0738 585 Coils Coil 463 503 - -
Lan4g0738 585 SMART pua_5 282 356 IPR002478 GO:0003723
Lan4g0738 585 TIGRFAM unchar_dom_2: uncharacterized domain 2 275 353 IPR004521 GO:0003723
Lan4g0738 585 PANTHER CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5 14 526 IPR004802 GO:0006396
Lan4g0738 585 TIGRFAM CBF5: putative rRNA pseudouridine synthase 41 366 IPR004802 GO:0006396
Lan4g0738 585 SMART DKCLD_2 33 91 IPR012960 -
Lan4g0738 585 SUPERFAMILY PUA domain-like 281 362 IPR015947 -
Lan4g0738 585 SUPERFAMILY Pseudouridine synthase 34 279 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Lan4g0738 585 ProSiteProfiles PUA domain profile. 281 356 - -
Lan4g0738 585 Pfam tRNA pseudouridylate synthase B C-terminal domain 212 278 IPR032819 -
Lan4g0738 585 Pfam PUA domain 282 354 IPR002478 GO:0003723
Lan4g0738 585 MobiDBLite consensus disorder prediction 416 585 - -
Lan4g0738 585 CDD PseudoU_synth_hDyskerin 73 255 - -
Lan4g0738 585 Pfam TruB family pseudouridylate synthase (N terminal domain) 95 211 IPR002501 GO:0006396
Lan4g0738 585 PANTHER H/ACA RIBONUCLEOPROTEIN COMPLEX SUBUNIT 4 14 526 - -
Lan4g0738 585 Pfam DKCLD (NUC011) domain 34 91 IPR012960 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0738 Lan-Chr4 9618078 9620075 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0738 10 461 NAC Transcription Factor Family AT3G57150 80.349 0.0 728
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0738 K11131 - gmx:100806355 805.438