Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0725 ATGGAGATTTCATCAATCATAGGGTTGCCTGAACTGGGGATAATGGAGGATCCTAACTTTTTCAATCAGTGGAACATAAGCTCTATCGATGCAACTAGCTTATTAGCAGGTTCTAGTTTTGGAGAGACCTTACAAAAAAGTTCAATCTCTAACTCAAACTCCAACCCCAAAACTTGCATGGAAAGTGAAAGACCTGCAAAACAGTTCAAAAGCAACTGGAATAACAACAGAAATCCTCAAACATCAGAGGCACAATTTGCTTCTAATTACTCAAATCTTCTTTCATTTGTTGATTCTAATTATTACACAAGTCAATTGGGACTAGTGAGGCCTAAGATGGATATGGTGTGTCCCAAAGTTGAAAGCAAGATAGCTCAGGAAGCTTTTGGGCATCAAAACTTTGTCTTCCAAGACTTCCATGAGGGCAAAATGATTGGGGCACGCCCTAAACATTCTACACCTCATGAACATGTGTTAGCTGAAAGGAAACGGAGAGAGAAACTCAGCCAGAGGTTCATTGATCTATCTGCCCTTGTTCCTGGCCTTAAAAAGATGGATAAAGCTTCTGTTCTTGGAGATGCTATAAAGTACTTGAAGCAAATGCAAGAGAAAGTGAGTTCTCTTGAGGAGGAAAAGAATAGGAAGAAAACTGCAGAATCTGTAGTATTTGTGAAGAAATCTATTCTATCAAATAGTGATGATTTAGACACAGGTGGTTCCTTTGATGAGGCACTACCTGAAATTGAAGCAAGAGTTTGGGAAAGAAATGTACTCATAAGAGTTCACTGTGAGAAGAAGAAAGGTGTTATAGAAAAAACAATCAGTGAGATTGAGAAACTCCATCTAAAAGTCATCAATACAAGTGCCTTGGCATTTGGGAGTTTTGTCCTTGATATAACCATCATTGCTCAGATGGAGGTGGAATTTAGCATGACAGTGAAGGATCTGGTGATAGAACTACGTTCAGCTTTTGCATCTTTCATGTGA 987 0.3891 MEISSIIGLPELGIMEDPNFFNQWNISSIDATSLLAGSSFGETLQKSSISNSNSNPKTCMESERPAKQFKSNWNNNRNPQTSEAQFASNYSNLLSFVDSNYYTSQLGLVRPKMDMVCPKVESKIAQEAFGHQNFVFQDFHEGKMIGARPKHSTPHEHVLAERKRREKLSQRFIDLSALVPGLKKMDKASVLGDAIKYLKQMQEKVSSLEEEKNRKKTAESVVFVKKSILSNSDDLDTGGSFDEALPEIEARVWERNVLIRVHCEKKKGVIEKTISEIEKLHLKVINTSALAFGSFVLDITIIAQMEVEFSMTVKDLVIELRSAFASFM* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0725 328 PANTHER BHLH TRANSCRIPTION FACTOR 2 327 - -
Lan4g0725 328 Pfam Helix-loop-helix DNA-binding domain 157 202 IPR011598 GO:0046983
Lan4g0725 328 Coils Coil 191 218 - -
Lan4g0725 328 PANTHER SYMBIOTIC AMMONIUM TRANSPORTER 2 327 - -
Lan4g0725 328 MobiDBLite consensus disorder prediction 45 78 - -
Lan4g0725 328 SMART finulus 158 207 IPR011598 GO:0046983
Lan4g0725 328 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 152 201 IPR011598 GO:0046983
Lan4g0725 328 Gene3D - 148 217 IPR036638 GO:0046983
Lan4g0725 328 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 155 217 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0725 Lan-Chr4 9551588 9554041 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0725 152 328 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 53.552 7.25e-55 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan4g0725 HLH 1.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0725 - - gmx:100798018 417.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0663 17 5758546 5761066 Lan4g0725 4 9551588 9554041 PCT
Lan4g0725 4 9551588 9554041 Lan17g0663 17 5758546 5761066 PCT