Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0710 ATGGCTTCTGCTTCGTCTTCTTCATCGAAGTTGTTGTGCTTCAATCCTCACTGCAATGAATTCAAATCCGAAAGACCTAACAAAGGTTGGAGACTCCGTAACGGTGACCTAGCTGAGCTTTGTGATCGATGCGGTTCTGCTTTTGAAGAAGGGAGATTCTGTGACATTTTTCACTCAAATGCTTCTGGTTGGAGGAATTGTGAGACTTGTAGGAAGGGGATTCATTGTGGATGTATTGTTTCATGTCATGCCTTTGTGTTGTTGGATCATGGGGAAATTGAATGCTTTGCCTGTGCCCGCAAACATATTCTTTTGCAGTCTAACCCAAAGTGGCCATCATCTTTTTCCCTTCAAAATCGTTTATCTGAGAGACTTAGAGACCTGCCTGCAAAAAACTGGAGTCAGTTAGCTGGATCAGGGCATGTATCATGGAAGCAAGCACCCAATCTGTTCAATTCTGTTTCTTCATCCGACCTGCATCCATATGTGTCCTCTCATGAAAGGTTACCTGCCTCTTCCTTGGAGAATAAAAATGAGGATTTGTGTGGAATGTCAGTTAATTGGAGTGCTAATTTTGGTCCACAGGAAATGACGCTTATGAATGGATTCAGGAATGGAGACAAATCAAGTTCATGTTTAAATATTTGTCAACAGCCTCTTTTTCTGAAGGAAGATTCGTCCCCGCAACCATTTGCTATGTCTGTACCTTATGCGACTCCAAATGAAAGAAATGGTCAAATTGGTGTAGCTGGAAGTCATCCACAACAAACTACACCTCTTCCAGGAAAACAATTTAGTGACACTCTGCATTTAGCACTGGAATCCTCACCTGAAGCTCAGGTTCATAGTGGACGACCCCAAGCAGATGCCAGAGAAAGAAACCAGTTACTACAACAGTATTGGCCTAGGTGTACTGATCTGGAGCTACAGCAAATAACCGTAGATTCTACTTCTGTAATTACTCCCTTGTTTCAAAAGACCTTGAGTGCTAGTGATGCTGGGCGAATTGGGCGTTTAGTGCTTCCAAAAAAGTGTGCTGAGGCCTACTTCCCATCTATTTCCCAGCCCGAAGGGTTGCCACTTAAAGTCCTTGATGCCAAAGGAAAAGAATGGACTTTTCAGTTTCGCTTCTGGCCCAACAATAACAGCAGAATGTATGTGTTAGAGGGTGTCACTCCCTGCATACAGTCCATGCAGTTGCAAGCAGGTGATACAGTAACATTTAGCCGGCTGGAGCCAGAAGGGAGATTGGTTATGGGTTTTAGAAGGGCTACAAACGATACGCCCACCGACCAGGACAATGAAACAAGTAAGACCGGAAATGGATTTTCTGCACTTGGCGAGGTCGAACTGGCTGATCCTAGTTCATGGTCTAAAATTGATAAGTCAGGATACATAGCAAAAGAAGTGCTGGAGAGAAAATCTTCAATCAGAAAGAGGAAAAGCAGCATGTTGGGTTCAAAGAGTAAACATCTGAAGATCGAAAATCAGGATCTAATAGAGCTGAAGATTACATGGCAAGAAGCTCAAGGCCTGCTCCGTCCCCCTCCTAGCCATGTTGCCAGCATTGTGGTGATTGAAGGTTTTGAATTTGAGGAATATGAGGATGCTCCAGTGCTTGGGAAGCCAACAATTTTCACCACTGATAATATGGGTGAAAAGGTCCAGTGGGCTCAATGTGAAGATTGTCTTAAGTGGCGTAAATTGCCAGCAAGTGCGCATCTTCCACCAAAATGGATGTGTTCTGATAATTTGTGGGATCCAGAAAGATCTTCTTGCTCAGCTGCACAAGAGCTGACAGCAGAACAACTTGAGAATTTGCTACCCCCTTGTAATTCAGCTGTTTCCAAGAAAATGAAGGCAGCCAAGCAGGATCCTGATAATGCTGAAGCTTTGGAGGGACTTGACACACTTGCAAATCTAGCTATCATGGGAGAGGGTGAGGCACTTTCAGCATCTTCCCAGGCCACAACTAAACACCCACGGCATAGACCTGGCTGCTCTTGCATTGTTTGCATCCAGCCTCCTAGTGGAAAGGGCCCCAAGCATGAGCAGACATGCACATGTAATGTATGTTTAACAGTGAAGCGCCGTTTCCATACCCTTTCATTACGCCGTGAGAAGAAGCAATCGGAAAGAGAAGCAGAGACAACACATAAAAAGCAGCATCCTCAACCATTACCTTCGTCTGAAATTTTACTTGATGATGATTCCCTGCCTCGTAGTAATGCATGTGATAGCAGCAGGCGTAACCTGAACAAGGAGGTCAATGATGGTTTAGATGATGATCTTATCAAGATAAACTCATTCACTTTGCCATTCAAAGGCCAAATTGACCTCAACATCCAGCCAGAGCGAGAAGAAGAGTTTTCACCTCGTTCAGATTCTGGTGGTATGATGAAGTTGCCCCATGATACTACTGATATGCATCCGAAGCATCTGAGTATGTTGAACTCTAGTACTGCAGACACATCTGGAAGTCAGACACAGCAGATTGGAGATGGAGTGAGGGATGAGAAACTTAGTAATTGTTTATCCCATGGCAGTAGTAGCCATAATGCTGATAAGGAACATGCACAAGCTTTGCCTATGAATGTGTGA 2601 0.4414 MASASSSSSKLLCFNPHCNEFKSERPNKGWRLRNGDLAELCDRCGSAFEEGRFCDIFHSNASGWRNCETCRKGIHCGCIVSCHAFVLLDHGEIECFACARKHILLQSNPKWPSSFSLQNRLSERLRDLPAKNWSQLAGSGHVSWKQAPNLFNSVSSSDLHPYVSSHERLPASSLENKNEDLCGMSVNWSANFGPQEMTLMNGFRNGDKSSSCLNICQQPLFLKEDSSPQPFAMSVPYATPNERNGQIGVAGSHPQQTTPLPGKQFSDTLHLALESSPEAQVHSGRPQADARERNQLLQQYWPRCTDLELQQITVDSTSVITPLFQKTLSASDAGRIGRLVLPKKCAEAYFPSISQPEGLPLKVLDAKGKEWTFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRLEPEGRLVMGFRRATNDTPTDQDNETSKTGNGFSALGEVELADPSSWSKIDKSGYIAKEVLERKSSIRKRKSSMLGSKSKHLKIENQDLIELKITWQEAQGLLRPPPSHVASIVVIEGFEFEEYEDAPVLGKPTIFTTDNMGEKVQWAQCEDCLKWRKLPASAHLPPKWMCSDNLWDPERSSCSAAQELTAEQLENLLPPCNSAVSKKMKAAKQDPDNAEALEGLDTLANLAIMGEGEALSASSQATTKHPRHRPGCSCIVCIQPPSGKGPKHEQTCTCNVCLTVKRRFHTLSLRREKKQSEREAETTHKKQHPQPLPSSEILLDDDSLPRSNACDSSRRNLNKEVNDGLDDDLIKINSFTLPFKGQIDLNIQPEREEEFSPRSDSGGMMKLPHDTTDMHPKHLSMLNSSTADTSGSQTQQIGDGVRDEKLSNCLSHGSSSHNADKEHAQALPMNV* 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0710 866 Gene3D - 302 428 IPR015300 -
Lan4g0710 866 CDD B3_DNA 322 423 IPR003340 GO:0003677
Lan4g0710 866 MobiDBLite consensus disorder prediction 703 756 - -
Lan4g0710 866 MobiDBLite consensus disorder prediction 812 836 - -
Lan4g0710 866 SMART B3_2 324 425 IPR003340 GO:0003677
Lan4g0710 866 ProSiteProfiles B3 DNA-binding domain profile. 324 425 IPR003340 GO:0003677
Lan4g0710 866 MobiDBLite consensus disorder prediction 705 721 - -
Lan4g0710 866 Pfam B3 DNA binding domain 324 424 IPR003340 GO:0003677
Lan4g0710 866 Pfam CW-type Zinc Finger 556 598 IPR011124 GO:0008270
Lan4g0710 866 ProSiteProfiles Zinc finger CW-type profile. 551 601 IPR011124 GO:0008270
Lan4g0710 866 SUPERFAMILY DNA-binding pseudobarrel domain 321 427 IPR015300 -
Lan4g0710 866 MobiDBLite consensus disorder prediction 778 866 - -
Lan4g0710 866 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 9 797 - -
Lan4g0710 866 Gene3D - 555 608 - -
Lan4g0710 866 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300-LIKE ISOFORM X1 9 797 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0710 Lan-Chr4 9464572 9474000 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0710 12 709 B3 DNA Binding Superfamily AT4G32010 44.837 0.0 558
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lan4g0710 B3 4.5e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0710 - - gmx:100807252 1383.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0710 4 9464572 9474000 Lan19g0972 19 17131050 17139101 LSH
Lan4g0710 4 9464572 9474000 Lan16g0114 16 888586 896839 LSH