Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0709 ATGAATGACTTATTCTCAAGTTCCTTCAAAAAATACACTGACTTGAGGGAACAGACTCACTTTGATGATGTGGAAGCAGGGAAGGAAACTGTGAATCTTGATAAATTCTTTGAAGATGTGGAGAATGTTAAAGAAGACATGAGGGTTGTTGAGAAGCTCTATAGAAAATTGCAGGAGGCCAATGAAGAAAGCAAGATTGTTCACAATGCTAAAACCATGAAGGATCTTCGAACGCGTATGGATAAAGATGTCGAGCAAGTCCTCAAACAAGTTAAGATCATCAAAGGCAAGCTTGAAGCATTAGAGAGATCCAATGCAGCAAATAGAAAGCTCTCAGGGTGTGGTCCAGGTTCTTCAACAGATAGAACAAGAACTTCAGTGGTTAGTGGCTTGGGTAAGAAGTTAAAGGATATGATGGATGATTTTCAAGGGTTAAGAGTAAGAATGCAACTTGAGTATAAGGAAACAGTGGAAAGAAGATATTTTACAATAACAGGAGAGAAAGCAGATGATGAAACTATAGAGAATTTGATATCAAGTGGAGAAAGTGAAAGTTTCCTTCAGAGAGCAATTCAAGAACAAGGGAGAGGTCAAATAATGGATACAATATCAGAAATTCAAGAGAGACATGATGCTGTTAAGGAGATAGAGAAAAACTTGATTGAGTTACATCAAGTGTTTTTGGATATGGCAGCACTTGTAGAATCTCAAGGCCAACAACTCAATAACATAGAGAGTCATGTTGCACATGCTAGTTCATTTGTAAGAAGAGGCACAGAACAACTTCAAGAAGCAAGAGAGCATCAAAAAAGCTCTAGGAAGTGGACATGTTATGCCAGTATTCTTGGTATTGTTCTTATCATTGTGATCTTATTTCCTCTCTTGTCATCAATTTTACCTCACTTGTTATTAAAATGA 918 0.3715 MNDLFSSSFKKYTDLREQTHFDDVEAGKETVNLDKFFEDVENVKEDMRVVEKLYRKLQEANEESKIVHNAKTMKDLRTRMDKDVEQVLKQVKIIKGKLEALERSNAANRKLSGCGPGSSTDRTRTSVVSGLGKKLKDMMDDFQGLRVRMQLEYKETVERRYFTITGEKADDETIENLISSGESESFLQRAIQEQGRGQIMDTISEIQERHDAVKEIEKNLIELHQVFLDMAALVESQGQQLNNIESHVAHASSFVRRGTEQLQEAREHQKSSRKWTCYASILGIVLIIVILFPLLSSILPHLLLK* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0709 305 MobiDBLite consensus disorder prediction 109 128 - -
Lan4g0709 305 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 203 265 IPR000727 -
Lan4g0709 305 CDD SNARE_syntaxin1-like 202 264 - -
Lan4g0709 305 SMART SynN_4 28 154 IPR006011 GO:0016020
Lan4g0709 305 Coils Coil 40 70 - -
Lan4g0709 305 Coils Coil 84 104 - -
Lan4g0709 305 CDD SynN 33 190 IPR006011 GO:0016020
Lan4g0709 305 SUPERFAMILY t-snare proteins 32 258 IPR010989 GO:0016020|GO:0016192
Lan4g0709 305 MobiDBLite consensus disorder prediction 111 127 - -
Lan4g0709 305 ProSitePatterns Syntaxin / epimorphin family signature. 209 248 IPR006012 GO:0005484|GO:0006886|GO:0016020
Lan4g0709 305 PANTHER T-SNARE-RELATED 11 296 - -
Lan4g0709 305 PANTHER SYNTAXIN 11 296 IPR045242 -
Lan4g0709 305 SMART tSNARE_6 198 265 IPR000727 -
Lan4g0709 305 Gene3D - 33 160 - -
Lan4g0709 305 Gene3D - 194 295 - -
Lan4g0709 305 Pfam SNARE domain 240 291 IPR000727 -
Lan4g0709 305 Pfam Syntaxin 35 238 IPR006011 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0709 Lan-Chr4 9462282 9464164 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0709 1 304 SNARE and Associated Proteins AT1G61290 77.632 1.78e-179 495
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0709 K08486 - gmx:100818999 503.442
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0709 4 9462282 9464164 Lan19g0971 19 17128345 17130165 LSH
Lan4g0709 4 9462282 9464164 Lan16g0115 16 893059 899018 LSH
Lan18g0589 18 10827135 10828494 Lan4g0709 4 9462282 9464164 PCT
Lan4g0709 4 9462282 9464164 Lan18g0589 18 10827135 10828494 PCT