Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0700 ATGGGGACGGAGGTGATAGAGAGGTGGGACACCTGGGAGGAGCTCCTCCTTGGTGGGGCCATTCTCCGCCATGGGACACGAGCTTGGAATATCGTCGCCGCCGAGCTCCGAGCACGAACTATTTCTCCTTACACTTTTACCCCCGAGGTCTGTAAAGCCAAGTATGAGGACTTGCAACAACAGTACTCTGGGAGCATGGCTTGGTTTGAAGAGCTTAGGAAGAAAAGAGTAGCAGAGCTGAAAAGAGCTCTAGAGATATCTGAAGATTCAATTGGGTCTCTACAATCAAAGCTTGAATTCCTTAAGGCTGGGAAGAATGAGAAAAGAAATGATTGTTATGTTGAAAATGACTCAGATAATCCTGAACTAGATGTGCCTACACTGAAATTGGAGCAAGTTGAATCTTCGACCAAAGAGACGTCGAAAGATGGACTATCTGCAGGGAGTTTCACACATATAACCAGGACAAGCTGGTCTCCTGAATGCCCCGCTGAAGACATGGAGACTAAGCCTAAAGTTGAGCATGACAAACTTTCGAGTGTAGATAAGTTAGCACATATCATTTATGAAGGACAAGGAGGATGTATTAAAAAACGTAGAGGGAAGCGGAAGAGGAAGAAATGTGGCAGAAATATTAAGGAAGCAAGTGTAGGAGAAAGTGAATTATTAGATTCAGCTGATATTGTGTCTTGGTGTAGAGAAAGCTCTACCAGCAATTATGGTGAAGTTGCCAAATCTTGTGGTGTAGATGATCAAAATAGGAACTCGAAAAGGGATGGAGTGGAATACATTATGGAGATTTTAGATTCTATTTTTGAAACTAAAGGTGCCTCGGCCTTCCGCCGCAGACTTGATAGTCAGAAGAGAGGAAGGTACAAGAAAATGATAAGGAGGCACATGGATTTTGACACTATAAGGTCAAGAATTAGCAGCCAAACAATTAACTCAGCTAAAGAACTTTTCAGAGACTTGTTGCTACTCACTAACAATGCTCTAGTATTCTACTCCAAGAGCACCCACGAATATAAATCTGCTCTTGTGCAAAGAGACCTTGTCACCAAAAAAATGAGGGAAAGTTTCAAGAGTGTTAGCAGCAACAAAGTCACCAATGCTAATGTGTCTATTCAATTACCTGTACAGAATAATCCTCATGTGAAACCAAGAAGTGTGCGCCCCGGTAACCGAAAGATCGTTGCAAAGGCTGTAGTTGGTGGAAGCAACTTTGCATCTGTGGTGTCACAAGGAACTAAGAAACCAAGTAAAACTGATTCTCCATCTTCAGTGGAATCTTTACCTATCAAGAAGAAAGGTTTTGGTAGACCAAAAAAGGGTGCATGTAGGACTTCAGGGGAAAGGCCTGCCACACCAATTAAGGGAAAGAGAAGGGTTAGAACTAACTGA 1401 0.4276 MGTEVIERWDTWEELLLGGAILRHGTRAWNIVAAELRARTISPYTFTPEVCKAKYEDLQQQYSGSMAWFEELRKKRVAELKRALEISEDSIGSLQSKLEFLKAGKNEKRNDCYVENDSDNPELDVPTLKLEQVESSTKETSKDGLSAGSFTHITRTSWSPECPAEDMETKPKVEHDKLSSVDKLAHIIYEGQGGCIKKRRGKRKRKKCGRNIKEASVGESELLDSADIVSWCRESSTSNYGEVAKSCGVDDQNRNSKRDGVEYIMEILDSIFETKGASAFRRRLDSQKRGRYKKMIRRHMDFDTIRSRISSQTINSAKELFRDLLLLTNNALVFYSKSTHEYKSALVQRDLVTKKMRESFKSVSSNKVTNANVSIQLPVQNNPHVKPRSVRPGNRKIVAKAVVGGSNFASVVSQGTKKPSKTDSPSSVESLPIKKKGFGRPKKGACRTSGERPATPIKGKRRVRTN* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0700 466 CDD Bromodomain 262 356 - -
Lan4g0700 466 Coils Coil 77 97 - -
Lan4g0700 466 MobiDBLite consensus disorder prediction 411 466 - -
Lan4g0700 466 Pfam Bromodomain 265 345 IPR001487 GO:0005515
Lan4g0700 466 SMART bromo_6 257 361 IPR001487 GO:0005515
Lan4g0700 466 MobiDBLite consensus disorder prediction 411 429 - -
Lan4g0700 466 ProSiteProfiles Bromodomain profile. 272 342 IPR001487 GO:0005515
Lan4g0700 466 SUPERFAMILY Bromodomain 260 361 IPR036427 GO:0005515
Lan4g0700 466 PANTHER BROMODOMAIN-CONTAINING PROTEIN 8 1 465 - -
Lan4g0700 466 Gene3D - 252 377 IPR036427 GO:0005515
Lan4g0700 466 PANTHER BROMODOMAIN PROTEIN 1 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0700 Lan-Chr4 9418172 9422121 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0700 - - gmx:100793951 663.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0700 4 9418172 9422121 Lan19g0965 19 17035033 17038426 LSH
Lan17g0685 17 6032420 6037594 Lan4g0700 4 9418172 9422121 PCT
Lan6g0708 6 6266784 6271986 Lan4g0700 4 9418172 9422121 PCT
Lan4g0700 4 9418172 9422121 Lan17g0685 17 6032420 6037594 PCT
Lan4g0700 4 9418172 9422121 Lan6g0708 6 6266784 6271986 PCT