Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0696 ATGGCGGAGGTACAGGGTTTCGAGTTTATGGTGGATGATGTTAACGTCACCGATGATGATGATGATGATAAACTTGTTATGGATATTGAATCCTTTCTCAGTGTTCTTGATGAGGATTGTGACCCTCTCGAGAGGTGTCCTGATGATTCTTCATTGAAAAATGTTTCACCCAGTGAATCTGACATCCATGATAATTTTCAGCTTCAAAAGAGGAATTCTATTGCTGACTGTGAACATGAAAACCAGGGACCTTCATCACAGACCTGCTCTTCCCCGAATGCATTTGCTGGTGCTTGTAGGGACTCATTTTATCTGGTTGAAAATGATGATATTTGCTACACAGAAATAAAAGGAGTTTCTAAGTGTGAGATACCTGCCTACAGTGTCGGTACAAGTTTCCCCATGGCAAATTCAAACAACATAGCCATTTATGGAGATAATTTGAATCTGAATATGTGGAAGAGTGGAAATGAGAGCCAAATCAAGCATGTCAAAGACGAGATCGAATATGAAAATGCTTTATACAGCTCTATCATCGATAATGTTGACTTAAATTTTCAAGAATATGAAACTTACTTGGAAGAAATTATTGGGCAAGTTTCTGGGCAACAGGAAAATGACTCATGTGCATCTTTTGAAACACCATTTGTGGATGCTGATAGATCATCACTTATTGCAACTTCAACTGATTCTACTATTTGTCAAGGCTCCAATGTTTCCAGTGATTATAGTGACCAGTTTCCATCCTTGAATTGTTATCATGGTATGAGTTATAGGCCTGTTGTTGCTAACACTTTGGGTTGTTTGCCTAATGGTGTTTTTCCTCAATTTTGGACTACAGAAGAAATGGTGAGAAGCATGAAGGTTGAAAATGTGGAGTCTTCTGCCGATAAGTCTCATGTGAGTGGCATGCAGTCAAGCACTACTGGGGGGATGTCTTTTCAGGATTGTCAATTTAGGTTAGCAGATAGTGAATATCCTTTATATTTTCCTAGTGGTGTTTCCTTTGAAAACAGGGCATCAGTGCAACTTTCAGCCTGTGCTTCATACATGTCAAGTGAAGGCCAATCATTTTGTTTCAAAGATGAAAGAGATGAATTGGTTATGCCTTACCCATATTCTTCTCAGAGTGATTATAATGAGTTAAATGTAGGTCAAGAGGTGAAACAATTACGTGGTATTTTACCTTCTGTGGGATGTCAGATTTATGATTTTCGCAAGTGTGAAGATAGTGACACAATTGTAAAAACTGAGAGGGCTGATTATTATCAAGATACTATTGATGGAACTGCTAATAAATTTCCAGGAAACATGGGAAATTTGAATTTCAAATCCGTAGACAAATCTTTGTCTAATGCACAGGCATCAATTGCCACTGAGAAGCGGTTTAATTGTGATATGGGTGAAGGAGAGGGAAAACTCATTCAGCATGAAAGTGTTGATTCCCAACTTTCAAAAGGAAGTAGCGAGAGATCCCGCATTGAGGATGACTCTGATATTTGCATTATTGAAGACACCAGTCATCCTGAACCTACAAGTCGATCTGCAGAACATGGGAATTCTCTTAATATGCCACAGTCTTCTAGATGTGGTTATACCCAATCTTGTATGGGGGGAGGCAGAAGGCCAAAGGCACGCGATGAGCAATACATATTACGAGTTGCATTGCAGGATCTATCTCAGCCAAAGTCAGAAATTAGTCTACCAGATGGACTTCTGACAGTTTCTCTCTTACGACATCAGAGAATTGCTTTATCATGGATGGTTCAGAAGGAAACATCAAATGTATACTGTTCAGGAGGAATTCTTGCTGATGATCAGGGTCTTGGAAAAACAGTATCAACTATTGCTTTAATATTAAAGGAAAGGCCTCCAGTGCTTAATACCTCCAACGATGGACAAAAAAGTGAATTACAAACTTTGAATTTGGATGCAGATGATGACTTGCTTCCTGAGAATGGTGGAGTGAAGAAAGAATTTGATACATGTCAGGATATGTCTAGATATCCAATCAAAACCATGAATTTGTTGGTGCCAAAGAAAGGAAGGCCGTCTGGAGGAACCCTTATTGTTTGTCCAACTAGTGTCCTGCGGCAATGGGCTGACGAGTTGCATAATAAGGTAACCTGCAAAGCAAAACTTTCTGTGCTGCTGTACCATGGAAGCAATCGAACAAAAGATCCTTATGAGCTTGCCAAGTATGATATTGTTCTGACAACTTATTCAATTGTCAGCTTGGAGGTCCCTAAGCAGCCTCTGGTTGACAAAGATGATGAAGAAAAAGGGACTCTTGAAGATCATACTGTGCCAAGTAGAAAAAGGAAATACCCTCCTAATTCTAGCAAAAGTGGCAAGAAAGTTTTGAACAGCATGATGCTTGAGGCCGTTGCTCGCCCTCTTGCTAAGGTGGCTTGGTTTAGAGTTGTCTTAGATGAGGCCCAGAGTATAAAGAATCACAGAACTCAAGTTGCAAGGGCTTGTTGGGGTCTTCGAGCTAAGCGTAGATGGTGCTTGTCAGGCACTCCTATCCAGAATGCAATTGATGATCTCTACAGTTACTTTAGATTTCTAAGATATGAACCTTATGCTGTGTACACATCATTCTGTTCTACAATTAAGATCCCAATCAGCAGAAGTCCATCAAAAGGGTATAGAAAGCTACAAGCTGTCTTAAAGACCATAATGTTACGTCGGACAAAAGGCACACTTCTTGATGGGGAACCTATTATTTCCCTGCCACCGAAGTCTGTAGAGTTGAAAAAGGTAGTTTTTTCACAGGAAGAACGCAACTTCTATTCTAGACTAGAGGCTGATTCACGTGCACAATTTCAGGAATATGCTGATGCTGGAACTGTGAAGCAAAACTATGTCAACATTTTGTTGATGCTTCTGCGCCTTAGGCAAGCTTGCGATCATCCCTTGCTTGTCAAGCGTTACAATTCTAACTCTCTCTGGAAATCATCAGTTGAGACGGAAATGAAACTTCCCCAAGAAGAACAATTATCTCTTCTAAAATGTTTAGAGACTTCCTTGGCCCTCTGTGGTATCTGTAATGTATCTCTGCAGGACCCTCCTGAAGACGCTGTTGTTTCCATCTGTGGTCACGTTTTTTGTAACCAGTGCATTTGTGAACATCTTACTGGTGTTGACAATCAGTGCCCTGCTTCAAAGTGCAAAACTCGACTAAGCATGTCTTCAGTGTTTTCGAAAGCCACATTAAACAGTTTTCTTTCTGGCCAGTCTTCAGATAACTTGCCTGGTAGCTCTGGTTCTGAAGCGGGGGAATTTGAGCCCTGTTCTCATACTCAGCCATGCGATTCTTCAAAAATTAAGGCTGCACTTGAGGTGTTGCAGTCATTGTCTAAACCACAATGCCGTACTTCCAAGAAAAATTACGCGCAACACATTTCTGGGGAAAGTATTGACTGCCTTAGAAATTCCTATGGTGCTGATAGTGGTAAATCTTTCAATGATTCTCCTGAGAGTCAAAATCTGCCTGGGGAGAGAAGCTCTGATGATTCAGTTGGTGTTGCAGGGGAGAAAGCTATAGTGTTTTCTCAGTGGACAAGGATGCTGGATTTGCTTGAAGCTTGTCTTAAGAATTCTTCAATTCAGTACCGAAGACTTGATGGAACAATGTCAGTCATTGCAAGAGATAAAGCTGTTAAAGATTTTAACACTCTCCCCGGGGTATCGGTTATGATTATGTCTTTGAAGGCTGCAAGTCTTGGTCTAAACATGGTGGCAGCTTGCCATGTTCTTATGCTAGATTTATGGTGGAATCCTACAACTGAAGACCAAGCAATAGATAGAGCACATCGAATTGGGCAGACTCGGCCTGTTACGGTTTTGCGGTTAACTGTGAAGGATACAGTTGAAGACCGTATTTTAGCTCTGCAGCATAAGAAGCGAAAGATGGTTGCATCAGCATTTGGCGAAGATGGAACAGGTGGCCAGCAAAGTCGCCTTACAGTGGATGATTTGAAATACTTGTTCATGATGTGA 4005 0.4082 MAEVQGFEFMVDDVNVTDDDDDDKLVMDIESFLSVLDEDCDPLERCPDDSSLKNVSPSESDIHDNFQLQKRNSIADCEHENQGPSSQTCSSPNAFAGACRDSFYLVENDDICYTEIKGVSKCEIPAYSVGTSFPMANSNNIAIYGDNLNLNMWKSGNESQIKHVKDEIEYENALYSSIIDNVDLNFQEYETYLEEIIGQVSGQQENDSCASFETPFVDADRSSLIATSTDSTICQGSNVSSDYSDQFPSLNCYHGMSYRPVVANTLGCLPNGVFPQFWTTEEMVRSMKVENVESSADKSHVSGMQSSTTGGMSFQDCQFRLADSEYPLYFPSGVSFENRASVQLSACASYMSSEGQSFCFKDERDELVMPYPYSSQSDYNELNVGQEVKQLRGILPSVGCQIYDFRKCEDSDTIVKTERADYYQDTIDGTANKFPGNMGNLNFKSVDKSLSNAQASIATEKRFNCDMGEGEGKLIQHESVDSQLSKGSSERSRIEDDSDICIIEDTSHPEPTSRSAEHGNSLNMPQSSRCGYTQSCMGGGRRPKARDEQYILRVALQDLSQPKSEISLPDGLLTVSLLRHQRIALSWMVQKETSNVYCSGGILADDQGLGKTVSTIALILKERPPVLNTSNDGQKSELQTLNLDADDDLLPENGGVKKEFDTCQDMSRYPIKTMNLLVPKKGRPSGGTLIVCPTSVLRQWADELHNKVTCKAKLSVLLYHGSNRTKDPYELAKYDIVLTTYSIVSLEVPKQPLVDKDDEEKGTLEDHTVPSRKRKYPPNSSKSGKKVLNSMMLEAVARPLAKVAWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYEPYAVYTSFCSTIKIPISRSPSKGYRKLQAVLKTIMLRRTKGTLLDGEPIISLPPKSVELKKVVFSQEERNFYSRLEADSRAQFQEYADAGTVKQNYVNILLMLLRLRQACDHPLLVKRYNSNSLWKSSVETEMKLPQEEQLSLLKCLETSLALCGICNVSLQDPPEDAVVSICGHVFCNQCICEHLTGVDNQCPASKCKTRLSMSSVFSKATLNSFLSGQSSDNLPGSSGSEAGEFEPCSHTQPCDSSKIKAALEVLQSLSKPQCRTSKKNYAQHISGESIDCLRNSYGADSGKSFNDSPESQNLPGERSSDDSVGVAGEKAIVFSQWTRMLDLLEACLKNSSIQYRRLDGTMSVIARDKAVKDFNTLPGVSVMIMSLKAASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVKDTVEDRILALQHKKRKMVASAFGEDGTGGQQSRLTVDDLKYLFMM* 1335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0696 1334 CDD SF2_C_SNF 1178 1286 - -
Lan4g0696 1334 ProSitePatterns Zinc finger RING-type signature. 1033 1042 IPR017907 -
Lan4g0696 1334 MobiDBLite consensus disorder prediction 474 527 - -
Lan4g0696 1334 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 906 1333 IPR027417 -
Lan4g0696 1334 MobiDBLite consensus disorder prediction 1081 1100 - -
Lan4g0696 1334 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1000 1116 IPR013083 -
Lan4g0696 1334 Gene3D - 548 641 IPR038718 -
Lan4g0696 1334 ProSiteProfiles Zinc finger RING-type profile. 1014 1057 IPR001841 -
Lan4g0696 1334 SMART helicmild6 1193 1276 IPR001650 -
Lan4g0696 1334 SUPERFAMILY RING/U-box 1010 1074 - -
Lan4g0696 1334 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 446 1333 - -
Lan4g0696 1334 MobiDBLite consensus disorder prediction 1153 1174 - -
Lan4g0696 1334 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1170 1329 IPR001650 -
Lan4g0696 1334 CDD DEXDc_SHPRH-like 577 898 - -
Lan4g0696 1334 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 563 898 IPR027417 -
Lan4g0696 1334 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR CHR28 446 1333 - -
Lan4g0696 1334 MobiDBLite consensus disorder prediction 754 784 - -
Lan4g0696 1334 SMART ultradead3 573 875 IPR014001 -
Lan4g0696 1334 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 592 860 IPR014001 -
Lan4g0696 1334 Gene3D - 1161 1334 IPR027417 -
Lan4g0696 1334 Gene3D - 767 899 IPR038718 -
Lan4g0696 1334 Gene3D - 670 759 IPR038718 -
Lan4g0696 1334 MobiDBLite consensus disorder prediction 513 527 - -
Lan4g0696 1334 Pfam SNF2-related domain 587 975 IPR000330 GO:0005524|GO:0140658
Lan4g0696 1334 MobiDBLite consensus disorder prediction 488 504 - -
Lan4g0696 1334 Pfam Helicase conserved C-terminal domain 1178 1276 IPR001650 -
Lan4g0696 1334 MobiDBLite consensus disorder prediction 1153 1170 - -
Lan4g0696 1334 MobiDBLite consensus disorder prediction 754 773 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0696 Lan-Chr4 9378372 9388830 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0696 469 1333 RAD5 or RAD16-like Gene Family AT1G61140 59.639 0.0 963
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lan4g0696 SNF2_N 3.4e-67 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0696 - - gmx:100805307 1842.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan18g0582 18 10726266 10738734 Lan4g0696 4 9378372 9388830 PCT
Lan6g0710 6 6293802 6303576 Lan4g0696 4 9378372 9388830 PCT
Lan4g0696 4 9378372 9388830 Lan18g0582 18 10726266 10738734 PCT
Lan4g0696 4 9378372 9388830 Lan6g0710 6 6293802 6303576 PCT