Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0689 ATGTACATAGCAGCAGGTTCCATTCGAAGGTCTTTTAAGGACTCTCTCAAACTTCTAGAAGCTGATATTCATCATGCCAATACCTTGGCGACAGATTTTCCAAGGGAATATGACGGTGCGTGCCTCCAGATGAGAATGTCTTACAGTCCAGCAGCACACCTTTTCCTCTTTTTGATGCAATGGACAGACTGCAATCTTGCCGGAGCCCTTGGACTGTTAAGAATCCTAATTTACAAGGTGTATGTGGACGGGACAACTACAATGTCTACCCAGGAAAGAAAAGCCAGTATTAGAGAATTCTACGCGGTCATATATCCCTCTTTATTGCAACTCCAACAAGGTGCCTCTGATACAGAGGATAAAAAACAGAAGACTGTATGCACGGAAAGGTATCGCAGAAGAGATGATGAGGAACACAGACAGGCTTCAGAGATAGACATTGAAAGAGAAGAAGAATGTGGAATATGCATGGAAATGAATAGTAAGATTGTGTTGCCCAACTGCAACCATGCCATGTGCCTGAAATGTTACCGTGAATGGAGAACAAGATCACAGTCATGTCCCTTCTGCCGCGACAGTCTTAAGAGAGTGAACTCGGCTGATCTGTGGGTATTGACCGACAATAGGGATGTCGTAGACATGGCAACTGTGACAAGGGAGAATCTAAGAAGGCTTTTCATGTACATAGATAAGTTGCCTTTGATCATTCCAGGCTCACTTTTTGACACATATGACTCACACCTAAGATAA 750 0.4347 MYIAAGSIRRSFKDSLKLLEADIHHANTLATDFPREYDGACLQMRMSYSPAAHLFLFLMQWTDCNLAGALGLLRILIYKVYVDGTTTMSTQERKASIREFYAVIYPSLLQLQQGASDTEDKKQKTVCTERYRRRDDEEHRQASEIDIEREEECGICMEMNSKIVLPNCNHAMCLKCYREWRTRSQSCPFCRDSLKRVNSADLWVLTDNRDVVDMATVTRENLRRLFMYIDKLPLIIPGSLFDTYDSHLR* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0689 249 PANTHER PEROXISOME BIOGENESIS FACTOR 10-LIKE 6 249 - -
Lan4g0689 249 SMART ring_2 153 190 IPR001841 -
Lan4g0689 249 PANTHER RING FINGER PROTEIN 41, 151 6 249 - -
Lan4g0689 249 Pfam Zinc finger, C3HC4 type (RING finger) 150 196 - -
Lan4g0689 249 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 108 218 IPR013083 -
Lan4g0689 249 ProSitePatterns Zinc finger RING-type signature. 168 177 IPR017907 -
Lan4g0689 249 ProSiteProfiles Zinc finger RING-type profile. 153 191 IPR001841 -
Lan4g0689 249 SUPERFAMILY RING/U-box 142 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0689 Lan-Chr4 9349091 9352438 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0689 77 194 C3H Transcription Factor Family AT5G41350 32.520 6.01e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0689 K25840 - gmx:100789769 446.817
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0702 17 6254012 6258711 Lan4g0689 4 9349091 9352438 PCT
Lan18g0576 18 10639052 10642861 Lan4g0689 4 9349091 9352438 PCT
Lan6g0722 6 6583514 6587836 Lan4g0689 4 9349091 9352438 PCT
Lan4g0689 4 9349091 9352438 Lan17g0702 17 6254012 6258711 PCT
Lan4g0689 4 9349091 9352438 Lan18g0576 18 10639052 10642861 PCT
Lan4g0689 4 9349091 9352438 Lan6g0722 6 6583514 6587836 PCT