Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0683 ATGAGTGCAGATACTAATTCTTGGATAAGGAGGACAAAATTCTCTCATACTGTGTGTCATAGATTGGATCCTTCTAGATTGACCTCTCTTCCTAGTAGCATTCAACCAGGTCTGAAGTTAAGGCCTTCACAGGTTCAAAGGAGTCCTGTATTAAGCATACAAAGATCTATATCCCCTTTGCCTGAAACTGTTGTTTCTGAGGCCTTCAAGGAAGCTCGGCATGAAAAGAAGAGGTTCTCGACGCCAGGTCCTCGAATGAATGATAATGATATGAGAAAAATGGGTAAGTTATCAAATAAGGATTCACAAGAAAGCAGGATATCAAGTGCAAAGTCAACTTCCACTAGTCCAATTAGGCAAGTGAAATTGAATGACAAGTCATCGAAGCATCGCAAAGATGGATGGGCTAAGTATTTTGACAATGGTGGAAGAAGGGTTACTGCTGAGGAAACAACTGATGAATGGACTGTTGACCTCTCTAAGCTGTTTCTTGGCCTTCGGTTTGCCCATGGGGCTCATAGTCGGCTTTACCATGGTGTATATAAGGAAGAACCAGTTGCTGTGAAAATTATTAGGGTACCTGATGATGACGAAAATGGAACCTTGGCTGCTAGATTAGAGAACCAGTTCATTAGAGAAGTCACCCTTTTATCTCGACTCCACCATCCAAATGTTATAAAGTTTGTAGGAGCATGCAGAAAGCCACCGGTCTATTTTATCATCGCAGAGTATGTAGAAGAAGGTTCCTTGAGGGCATATTTGCATAAATTGGAGCGCACAACTGTATCTTCACAAAAGCTAATATCTTTTGCTCTGGATATTGCTCGAGGAATGGAATATATACACTCTCAAGGTGTCATTCATCGAGACCTTAAACCAGAGAATGTCCTCGTCGATGAAGACTCTCATCTTAAAATTGCTGATTTCGGCATTGCTTGTGAGGAGGCAGTCTGTGACTTAATGGCTGATGACCCTGGTACCTACCGTTGGATGGCACCTGAGATGATCAAGCGTAAATCCTATGGGAAAAAGGTTGATATCTACAGTTTTGGACTTATGTTATGTGAGATGGTGACTGGAACAATACCATATGAGGATATGACTCCAATCCAGGCTGCTTTTGCAGTAGTAAACAAGAATTTAAGGCCTTCTATTCCTACAAACTGTCCACCCACAATGAGAGCATTAATTGAGCAATGTTGGTTGTCGCAACCCGATAAACGACCCGAGTTCTGGCAGATTGTTAAGGTTTTAGAGCAATTTGAATCTTCACTTGCCCGCGACGGAACCCTGACTCTGCTGCAAAACCCTTGTTCACATGATCATAAGAAAGGACTTCGAAATTGGATTCAAAAGCTTGGCCCTGTGCATCAAAACAATGGTCCTGTTCTTAAGCCCAAATTCATATGA 1410 0.4199 MSADTNSWIRRTKFSHTVCHRLDPSRLTSLPSSIQPGLKLRPSQVQRSPVLSIQRSISPLPETVVSEAFKEARHEKKRFSTPGPRMNDNDMRKMGKLSNKDSQESRISSAKSTSTSPIRQVKLNDKSSKHRKDGWAKYFDNGGRRVTAEETTDEWTVDLSKLFLGLRFAHGAHSRLYHGVYKEEPVAVKIIRVPDDDENGTLAARLENQFIREVTLLSRLHHPNVIKFVGACRKPPVYFIIAEYVEEGSLRAYLHKLERTTVSSQKLISFALDIARGMEYIHSQGVIHRDLKPENVLVDEDSHLKIADFGIACEEAVCDLMADDPGTYRWMAPEMIKRKSYGKKVDIYSFGLMLCEMVTGTIPYEDMTPIQAAFAVVNKNLRPSIPTNCPPTMRALIEQCWLSQPDKRPEFWQIVKVLEQFESSLARDGTLTLLQNPCSHDHKKGLRNWIQKLGPVHQNNGPVLKPKFI* 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0683 469 PANTHER TYROSINE KINASE FAMILY PROTEIN 4 445 - -
Lan4g0683 469 ProSiteProfiles Protein kinase domain profile. 162 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan4g0683 469 ProSitePatterns Serine/Threonine protein kinases active-site signature. 286 298 IPR008271 GO:0004672|GO:0006468
Lan4g0683 469 MobiDBLite consensus disorder prediction 69 100 - -
Lan4g0683 469 MobiDBLite consensus disorder prediction 101 122 - -
Lan4g0683 469 PRINTS Tyrosine kinase catalytic domain signature 242 255 IPR001245 GO:0004672|GO:0006468
Lan4g0683 469 PRINTS Tyrosine kinase catalytic domain signature 280 298 IPR001245 GO:0004672|GO:0006468
Lan4g0683 469 PRINTS Tyrosine kinase catalytic domain signature 326 336 IPR001245 GO:0004672|GO:0006468
Lan4g0683 469 PRINTS Tyrosine kinase catalytic domain signature 345 367 IPR001245 GO:0004672|GO:0006468
Lan4g0683 469 PRINTS Tyrosine kinase catalytic domain signature 389 411 IPR001245 GO:0004672|GO:0006468
Lan4g0683 469 Gene3D Phosphorylase Kinase; domain 1 150 246 - -
Lan4g0683 469 CDD STKc_MAP3K-like 169 418 - -
Lan4g0683 469 SUPERFAMILY Protein kinase-like (PK-like) 147 418 IPR011009 -
Lan4g0683 469 Pfam Protein tyrosine and serine/threonine kinase 168 418 IPR001245 GO:0004672|GO:0006468
Lan4g0683 469 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 4 445 - -
Lan4g0683 469 SMART serkin_6 162 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan4g0683 469 Gene3D Transferase(Phosphotransferase) domain 1 247 448 - -
Lan4g0683 469 MobiDBLite consensus disorder prediction 69 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0683 Lan-Chr4 9317669 9321073 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0683 1 457 MAP Kinase Kinase Kinase AT5G58950 56.461 0.0 568
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Lan4g0683 PK_Tyr_Ser-Thr 1.3e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0683 - - gmx:100500590 717.613
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0683 4 9317669 9321073 Lan19g0931 19 16683393 16686492 LSH
Lan17g0707 17 6311449 6315338 Lan4g0683 4 9317669 9321073 PCT
Lan6g0728 6 6626273 6629452 Lan4g0683 4 9317669 9321073 PCT
Lan4g0683 4 9317669 9321073 Lan17g0707 17 6311449 6315338 PCT
Lan4g0683 4 9317669 9321073 Lan6g0728 6 6626273 6629452 PCT