Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0682 ATGAGTAGTTCAATTTCTTCTATTGAGGTCATTGAGTTTTTGCTTCCTGCTGCAATATTGATGGAGAAAAACCAAAACTCTTCAACCAGAACTGATAGAAAAATCGTTGAGAGAAATAGAAGAAATAAAATGAAGACTCTCTCATCCATGCTCAACTCACTTGTACCTCAACAAAGCTCAAGGGAGTCTTTTTCAATGCCGGATCAGCTACATGAAGCCACGAACTACATAAAGAAGTTGCAGATAAACCTGGAGAAATTGAAGGACAAGAAGAACACTCTAGAGGAAATTCAAAGAGCAAATATGAGCACAAATAGAGTAGGAGGGTCAAAGTTTCCACAAATAGAGATCCAACAAATGGGTTTAGCCTTAGTGGTTAGTTTGATAACTGGGTTGGATTGCCACTTCATGTTCAAAGAGTGCATTCGAGTTCTTGGTGAAGAAGGAGCAGATATTGTTAGTGCCAATTATATAGTTTCTGAAGATTCAATTTTGCACACAATACACTCTCAGATAGAGGAATCTTCCAATGGAGCAAGGATATCTGAGAGAGTGAAGACTTGTGTGTATGATTCTCTTCTGTGGAGCAATGTTGCATTTTAA 603 0.3798 MSSSISSIEVIEFLLPAAILMEKNQNSSTRTDRKIVERNRRNKMKTLSSMLNSLVPQQSSRESFSMPDQLHEATNYIKKLQINLEKLKDKKNTLEEIQRANMSTNRVGGSKFPQIEIQQMGLALVVSLITGLDCHFMFKECIRVLGEEGADIVSANYIVSEDSILHTIHSQIEESSNGARISERVKTCVYDSLLWSNVAF* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0682 200 Gene3D - 20 107 IPR036638 GO:0046983
Lan4g0682 200 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 24 190 IPR015660 GO:0003700|GO:0006357
Lan4g0682 200 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 26 96 IPR036638 GO:0046983
Lan4g0682 200 Coils Coil 70 100 - -
Lan4g0682 200 PANTHER TRANSCRIPTION FACTOR BHLH162 24 190 - -
Lan4g0682 200 Pfam Helix-loop-helix DNA-binding domain 30 81 IPR011598 GO:0046983
Lan4g0682 200 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 28 80 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0682 Lan-Chr4 9309821 9313043 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0682 24 189 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 44.444 2.72e-41 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan4g0682 HLH 7.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0682 - - lang:109345606 382.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0682 4 9309821 9313043 Lan19g0930 19 16675689 16677162 LSH