Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0676 ATGATATCTCAAATACCAATGAGTCAGAAGAGACCCATGTTGGCACAACCACATGCTGGTCTAATACCTTCAACACTGTACAATAAAGAACATCTTGGATACCTGGTTGGAAATGATGAACCAAGTTTTCAGGATCTTTCAAAATCAAGTAACCTTAAGTTCTTGGCTGGGAGTAGTTCAAGTCAATCCCTGCTAGATGCAGGGAAGCAGGTCCAGAATCAAATCTTGAAGGATAGTGGAATTGGCATTTGTTTGGGGAAGGATGTACCTAGAGACCCTCTGCAATTAGTACAACCAAAAACCAATGAAGCTCTCAATCTAACACCATTAGATGGATGGCTAAGAAATGTTGGTGGTGGCCGAAACCAGGTATTAACTTCACTTGTGCACGAACCGAATTATAGGCATCAATGTCAAGTGTTGAAAACACAAAATCATGTAGCAGTTCCTGCTCAAATACTTGAGTCTACTCCTGCAAGTCAAGCTTTTACTGTTCCTGGAATCTCTACCAAATATAGCAGCCAATATCTGAAGACTCCAACTCCAAAGATTGAATCAAGTAATAAGGATAAGCAGGTGATGGAGCCAGTGGTTAAAACGGCGGAGAATCAAAACCAGCGCGATCAGCAACTGCAGTCCCAGGATGTAGAGATGAGCGGAATGAGAAAGAAAACAGTATCCTTACGACTCGGACAAAATGGCCAGGACTGTGCCAGTGTAGCAGATGGAAAACCTGTGGATGAAAGTGTGGAGTCTTTCCTTTCTTTGGAAAATGAACATGCTGATCATATAATTGCGCCTTTCAGCAATCTGAAGCGTATTTCAACTTCATGCAGCAGAAATGAAAATAAAGGTTTTACATTTGAAGAGGTTGGTTGCCTTCATTCAAGTAAAGGCAAGGTTTTGTCCAGCCATTTTTCTTCGGATGGAAAGATTTTGGCAAGTGCTGGACATGAGAAAAAGGTTTTCATTTGGAACACGGAAACTTTTGATTGTGTTACTACCGCAGAAGAGCATTCACTTCTCATCACAGATGTTCGATTCAGAACAGGCTCAACTTTATTTGCAACATCCTCCTTTGATAGATCTGTAAGACTATGGGATGCTGCAAGACCAACCAGATCATTGCTCAAACTTGAAGGGCATGCCGAACAAGTAATGTCATTAGATTTCCACCCAAGAAAGGTGGACCTTCTATGCTCGTGCGATATCAATGATGTAATTCGGCTGTGGAATGTCAATCAAGGTGCATGCATGCATATCACTAAGGGAGGTAGTAAACAAGTGAGATTTCAACCTGATTTTGGGAAGCTTCTTGCTACTGCTACAGGAAATGATATCAAGATAGTTGATGTTGAGGCTGATAGCATTCTGTGCAATCTAAAGGGACATGTTAAAGACATTCTTTCCATTTGTTGGGATAGAAGTGGAAACTACATTGCCTCCGTTAGCGAAGATAGTGCACGTATCTGGTCATCGGATGGAAAGTGCATCCATGAGTTACATTCAACTGGAAACAAGTTCCAATCTTGCATATTTCATCCAGCATATCTTAACCTCTTAGTTATTGGTGGCTATCAGACTCTGGAATTATGGAGTCCAACCGATGGCAACGAAACGTGGAGTGTTGCAGCACACAAAGGATTAATTGCTGGATTAGCAGAATCACCCCATGATGAATTGATTGCCTCAGCTAGCCATGATTGTTGTGTGAAACTATGGAAATAA 1728 0.4144 MISQIPMSQKRPMLAQPHAGLIPSTLYNKEHLGYLVGNDEPSFQDLSKSSNLKFLAGSSSSQSLLDAGKQVQNQILKDSGIGICLGKDVPRDPLQLVQPKTNEALNLTPLDGWLRNVGGGRNQVLTSLVHEPNYRHQCQVLKTQNHVAVPAQILESTPASQAFTVPGISTKYSSQYLKTPTPKIESSNKDKQVMEPVVKTAENQNQRDQQLQSQDVEMSGMRKKTVSLRLGQNGQDCASVADGKPVDESVESFLSLENEHADHIIAPFSNLKRISTSCSRNENKGFTFEEVGCLHSSKGKVLSSHFSSDGKILASAGHEKKVFIWNTETFDCVTTAEEHSLLITDVRFRTGSTLFATSSFDRSVRLWDAARPTRSLLKLEGHAEQVMSLDFHPRKVDLLCSCDINDVIRLWNVNQGACMHITKGGSKQVRFQPDFGKLLATATGNDIKIVDVEADSILCNLKGHVKDILSICWDRSGNYIASVSEDSARIWSSDGKCIHELHSTGNKFQSCIFHPAYLNLLVIGGYQTLELWSPTDGNETWSVAAHKGLIAGLAESPHDELIASASHDCCVKLWK* 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0676 575 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 543 575 - -
Lan4g0676 575 SMART WD40_4 287 326 IPR001680 GO:0005515
Lan4g0676 575 SMART WD40_4 494 533 IPR001680 GO:0005515
Lan4g0676 575 SMART WD40_4 372 412 IPR001680 GO:0005515
Lan4g0676 575 SMART WD40_4 536 575 IPR001680 GO:0005515
Lan4g0676 575 SMART WD40_4 454 492 IPR001680 GO:0005515
Lan4g0676 575 SMART WD40_4 415 451 IPR001680 GO:0005515
Lan4g0676 575 SMART WD40_4 329 368 IPR001680 GO:0005515
Lan4g0676 575 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 72 575 IPR044716 GO:0003714
Lan4g0676 575 Gene3D - 427 575 IPR015943 GO:0005515
Lan4g0676 575 ProSiteProfiles Trp-Asp (WD) repeats profile. 543 575 IPR001680 GO:0005515
Lan4g0676 575 CDD WD40 290 575 - -
Lan4g0676 575 SUPERFAMILY WD40 repeat-like 288 575 IPR036322 GO:0005515
Lan4g0676 575 Pfam WD domain, G-beta repeat 295 326 IPR001680 GO:0005515
Lan4g0676 575 Pfam WD domain, G-beta repeat 459 492 IPR001680 GO:0005515
Lan4g0676 575 Pfam WD domain, G-beta repeat 539 575 IPR001680 GO:0005515
Lan4g0676 575 Pfam WD domain, G-beta repeat 331 368 IPR001680 GO:0005515
Lan4g0676 575 ProSiteProfiles Trp-Asp (WD) repeats profile. 336 368 IPR001680 GO:0005515
Lan4g0676 575 ProSiteProfiles Trp-Asp (WD) repeats profile. 294 335 IPR001680 GO:0005515
Lan4g0676 575 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 379 416 - -
Lan4g0676 575 ProSiteProfiles Trp-Asp (WD) repeats profile. 379 421 IPR001680 GO:0005515
Lan4g0676 575 ProSitePatterns Trp-Asp (WD) repeats signature. 399 413 IPR019775 -
Lan4g0676 575 Gene3D - 267 426 IPR015943 GO:0005515
Lan4g0676 575 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 336 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0676 Lan-Chr4 9280090 9284621 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0676 312 491 U-box Gene Family AT2G33340 25.000 5.44e-14 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0676 - - lang:109345600 1154.81