Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0675 ATGGAGGAAGGAAACTGGGCTGAGGGAAAGAGGACCTTGGAGTATGAGGATGAAGAAGAGGAAGAAGAAGAAGTTATGATGAGTTATGGAGAAGATCATAGGAGGAATAAGAAGAGAGTGGTGGTGACAACAGATCTATATAGCAGCAAAAGAGGGTCCAAAGCTGGAGGGTCAGTGACACCTTGTTGTCAAGTTGATAGTTGCAAAACTGATCTAAGTGATGCTAAGCAGTATCATAGGAGGCACAAGGTTTGTGAGTACCATGCCAAAGCTCCTACAGTGCTCATTGCAGATCAACACCAAAGGTTTTGCCAGCAATGTAGCAGGTTCCATGAATTGTCAGAATTTGATGAGTCAAAAAGGAGTTGTAGAAGGCGTTTGGCTGGACATAATGAAAGGCGTCGCAAAAATGCAGTTGATTATCACGGAGAAGGATTTCATTGA 444 0.4324 MEEGNWAEGKRTLEYEDEEEEEEEVMMSYGEDHRRNKKRVVVTTDLYSSKRGSKAGGSVTPCCQVDSCKTDLSDAKQYHRRHKVCEYHAKAPTVLIADQHQRFCQQCSRFHELSEFDESKRSCRRRLAGHNERRRKNAVDYHGEGFH* 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0675 147 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 3 15 137 - -
Lan4g0675 147 ProSiteProfiles Zinc finger SBP-type profile. 60 137 IPR004333 GO:0003677
Lan4g0675 147 SUPERFAMILY SBT domain 61 142 IPR036893 GO:0003677|GO:0005634
Lan4g0675 147 Pfam SBP domain 63 136 IPR004333 GO:0003677
Lan4g0675 147 PIRSF SBP 3 147 IPR017238 GO:0003677|GO:0003700|GO:0009908
Lan4g0675 147 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 15 137 IPR044817 GO:0003677
Lan4g0675 147 Gene3D - 53 124 IPR036893 GO:0003677|GO:0005634
Lan4g0675 147 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0675 Lan-Chr4 9276061 9277784 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0675 58 140 SBP-box Gene Family AT2G33810 73.494 1.28e-41 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lan4g0675 SBP 6e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0675 - - lang:109329071 217.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0675 4 9276061 9277784 Lan19g0922 19 16614629 16617936 LSH
Lan4g0675 4 9276061 9277784 Lan16g0151 16 1187076 1190229 LSH