Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0669 ATGGGCTTGATTGATCTTAACACCACAGAGGATGATGAAACTCTATCATCTTCTTCTTCTTCTTCTCACTCTGGCATAAGCACTTGTGCTTCAGCTTTACCTCCTCCTTCTGTGTGCTTAGAGTTATGGCATGCTTGTGCTGGACCTTTGATCTCTCTTCCTAAGAAGGGAAGTGTTGTTGTTTACTTTCCACAGGGTCACTTTGAGCAACAAGCTCAAGATTTTCCAATCACTGCTTATAACATCTCACCCCATGTGTTCTGTCGTGTGCTTGATGTTAAGCTTCACGCAGAGGAAGGGAGTGATGAAGTGTATTGCCAGCTCTTGTTGGTTCCTGAAAATGAGAAAGTAGAGCAAAACTTGCGGGCCGGGGAACTTGATGCTGATGGTGAAGAGGAGGATGCTGAAGCTGTAGTGAAATCAACAACACCTCATATGTTCTGCAAGACTCTGACTGCTTCTGATACCAGCACTCATGGAGGATTTTCCGTTCCTCGTCGAGCAGCTGAAGATTGCTTCCCGCCGCTGGATTACAGTCAACAAAGACCTTCACAAGAGCTTGTGGCAAAGGATCTGCATGGCCTAGAATGGAAGTTTCGGCATATATACCGGGGTCAGCCACGGAGGCATTTGCTCACAACTGGATGGAGCGCATTTGTGAACAAGAAGAAGCTTGTGTCTGGTGATGCTGTGTTATTTCTCAGAGGTGAGGATGGAGAGCTGAGATTAGGGATTCGTCGGGCAGCTCAGCTGAAGAGTGGTACCTTTGCAGTTCCCACCAGTCAGCAATTGAATCCTAGCACTCTCATGGATGTCATTAATGCTTTGTCTGCGCGATGTGCCTTTAGCGTTTGCTATAATCCAAGGGTCAGCTCCTCAGAATTTATCATACCACTCCACAAATTCTCAAAGAGCCTCGATTGTTCTTATTCAGTTGGAATGAGGTTCAGGCTACGCTTTGAAACTGAAGATGCAGCGGAGCGAAGATTCACAGGATTAATAGCTGGAATTAGTGATGTGGATCCTGTTAGATGGCCGGGATCAAAATGGAGATGCCTACTGGTAAGGTGGGATGACATAGATGCTGCTCGGCATAATAGGGTTTCCCCATGGGAAATTGAGCCATCTGGTTCTGCTTCCAGTTCCAGTAACTTGATGGCAGCTGGTTTCAAGAGGAGCAGGATTGGATTGAGTTCAGCGAAGCTAGAATTTCCAGTTCCCAATGGGATTGGAGCCTCAGACTTTGGGGAATCATCAAGATTCCGGAAGGTCTTGCAAGGTCAAGAAATGTTCGGCGTTAATACTCCCTATGATGGTATTAGCGCTCAGAGTCCCCGGTTATCTGAGTTCGGGAGGTGTTATCCTAGTTCAGGAAAAAATGCCAGAATCCCACAAGTAAGTTCTGATTTTTCCAGCAATGGCATAGGCTTCAGTGAATCTTTTCGATTGCAGAAGGTCTTGCAAGGTCAAGAAATACTTCCAAGCCAACCCTATGGACGAGCCTTGTCTATGGAGGAGGCTCACAGAAATGGTCGCTTTGGACTCTTTGATGGTTATTATCCAATGCTTGGCTCCAGGAATGGATGGTCTCGTCAGATGCATGATAATTCTTCACATTTGCATGCTTCTGTTCCATCAGGGCAAGTGTCATCTCCATCGTCTGTGTTAATGTTCCAGCAATCAGTCAATCCAGTTTTGAACACCAACTATAATAACATACACAATCAGGAGGGCAAAATCCATTACCACGGTTCATATGCTTCTGAAATGAAAGGTCGAACTTCTGCAGATTTCACATCCGTTCAGCCTATTTACTCCGGGCACGCTCAGGAAGCTACAAATTCTTTTGGCATGTTTAATATGCATAATCAGTTGGCCGTTTCTCGTTCACATGAATCAGTTTCAGCGCTCATAGACAGTCAAGAGATGGCTTCCTCATGTAAAAGTAGCTGCAGACTCTTTGGTTTTTCATTAACCGAGGACAGAAACATTGCAAGTAAAGAAGCTGACCCATCTACAATCACTTGTCAATTGAATTCCAGGCCTCCCTTTGCTAGACACGTTGATGATGAGTTCCACCCTGGCCGGGCTCTCAGGAATAAGGCGGTTGTTGGAAGTAACTGCACCAAAGGTGTGTTGCAGTATTGA 2148 0.4562 MGLIDLNTTEDDETLSSSSSSSHSGISTCASALPPPSVCLELWHACAGPLISLPKKGSVVVYFPQGHFEQQAQDFPITAYNISPHVFCRVLDVKLHAEEGSDEVYCQLLLVPENEKVEQNLRAGELDADGEEEDAEAVVKSTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWKFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGEDGELRLGIRRAAQLKSGTFAVPTSQQLNPSTLMDVINALSARCAFSVCYNPRVSSSEFIIPLHKFSKSLDCSYSVGMRFRLRFETEDAAERRFTGLIAGISDVDPVRWPGSKWRCLLVRWDDIDAARHNRVSPWEIEPSGSASSSSNLMAAGFKRSRIGLSSAKLEFPVPNGIGASDFGESSRFRKVLQGQEMFGVNTPYDGISAQSPRLSEFGRCYPSSGKNARIPQVSSDFSSNGIGFSESFRLQKVLQGQEILPSQPYGRALSMEEAHRNGRFGLFDGYYPMLGSRNGWSRQMHDNSSHLHASVPSGQVSSPSSVLMFQQSVNPVLNTNYNNIHNQEGKIHYHGSYASEMKGRTSADFTSVQPIYSGHAQEATNSFGMFNMHNQLAVSRSHESVSALIDSQEMASSCKSSCRLFGFSLTEDRNIASKEADPSTITCQLNSRPPFARHVDDEFHPGRALRNKAVVGSNCTKGVLQY* 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0669 715 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 28 715 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lan4g0669 715 Gene3D - 309 383 - -
Lan4g0669 715 Coils Coil 114 134 - -
Lan4g0669 715 Pfam Auxin response factor 273 353 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lan4g0669 715 Gene3D - 145 249 IPR015300 -
Lan4g0669 715 MobiDBLite consensus disorder prediction 9 26 - -
Lan4g0669 715 Pfam B3 DNA binding domain 147 248 IPR003340 GO:0003677
Lan4g0669 715 PANTHER AUXIN RESPONSE FACTOR 28 715 - -
Lan4g0669 715 SMART B3_2 147 249 IPR003340 GO:0003677
Lan4g0669 715 CDD B3_DNA 145 247 IPR003340 GO:0003677
Lan4g0669 715 MobiDBLite consensus disorder prediction 1 26 - -
Lan4g0669 715 ProSiteProfiles B3 DNA-binding domain profile. 147 249 IPR003340 GO:0003677
Lan4g0669 715 SUPERFAMILY DNA-binding pseudobarrel domain 140 253 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0669 Lan-Chr4 9233507 9239954 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0669 37 492 B3 DNA Binding Superfamily AT5G60450 51.059 5.18e-147 445
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lan4g0669 B3 2e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0669 K14486 - gmx:100789906 1092.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0669 4 9233507 9239954 Lan19g0907 19 16477659 16484285 LSH