Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0639 ATGTTGTCTTCTTCTTCTGTTTGGATCTCTGAAACCATGAATCTGAGCAACGGTAAAGGAACCACCACCATGTCAACGCCTACTTCAACTTCATCTTTCAAGTCTTCCGACGCCGTCTCCGATAAGTTTCCGGCGGGTCTCCGAGTACTTGTGGTTGATGATGACCCCACTTGTCTTATGATCCTTGATAGGATGCTTCGTGCGTGCTTATATGAAGTGACAAAATGCACGAGGGCAGAGGTTGCATTGTCAATTCTGAGAGAGAACAAAAATGGGTTCGATATCGTTCTAAGCGACGTGCATATGCCTGATATGGATGGATTTAAACTTCTGGAGCATATTGGACTCGAGATGGACCTTCCGGTTATTATGATGTCAGCGGATGATGGAAAACAAGTTGTAATGAAGGGTGTGACACATGGTGCTTGCGATTATCTAATTAAACCCGTGCGAATTGAAGCTTTGAAGAATATATGGCAGCATGTGGTTCGGAGGAGAAAGAATGGGTGGAAAGATCTGGAGCAATCAGGTAGTGTAGATGAAGGAGATCGGCAGATAAAGGCATCTGATGATGCGGATTACTCGTCATCCGCAAATGAAGGGAAATCCTCCAAGAAGAGGAGGGACGAGGAAGAAGATCCAGATGAGAGGGATGATTCCTCCACGTTAAAGAAGCCGCGGGTCGTTTGGTCTGTTGAGCTCCATCAGCAGTTTATGGCTGCTGTCAATCAACTGGGACTGGACAAGGCAGTTCCTAAAAAGATTCTGGAATCGATGAATGTTCCTGGGCTAACTAGAGAAAATGTTGCTAGCCACCTCCAGAAATACCGTTTGTATCTTAGAAGGTTGAGTGGAGTATCACCGCAGCAGAATAACTTCAACAACCCTTTCATCAGCCCCCAAGAGGCCTCATTTGGGGCAACTTCAGTCAATGGAATCGACCTTCAAACGCTTCAAGCTGCTGGCCACCTCTCAGCACAAAGTCTAGCCGGTCTTCAAGCAGCAGGGCTCGGCAGGCCAACTGCAAAAGTAGGTGTATCTATGCCTCTAGTTGAACAAAGGAACCTTTTCAGTTTTGAAAACCCAAAAATAAGATTTGGAGAAGGTCAACTGCAACATTTGAGCAACAGTAAACCAATGAACTTACTTCACGGAATCCCTACCAACATGGAGCCAAAGCAGCTTGCCAATTTGCACCAGCCTAACCAATCCATCGGCAACTTGAATTTGCGAGTCAATTCTTCTACTGTACAGAGCAAACCCTTGGTGATGCATATGGCTCAATCCCAACCAAGAGGTCAGATGATAAGTGAAAATACTGGTTCTCACGTTAATAGGCTTCCATCATCATTGGTGCACCCTAAATTACCAAACGGAACTTCTAATGGTGTTTTGGAATATGGGATTTCTGGCACCAGCAACATAACTCCGATTTATAGTCCTGTTCATCAAAACTCTTCAATGCTGAGTTTTCCCATGAACCAATCCACTGAAATGGCTGCCAGTAGTTTCCCTCTTGGAAGCACTCCACGAATATCTAGTATGGCAACAAAAGGCATGTTTCATGAGGAAGTTTCGTCAGGAATTAAGGGATCCGGTGGATTTGTTCCAAGTTATGATATCTTTGATGAACTCAATCAGCATAAATCCCATGATTGGGACTTAACGAATGCGGGCCTGACATTTGATGCCTCTCAGCATGCAAATACTTTACAGCGTACCGTTGATGTCTCACCATCAGTTTTAGTCCGTCAGAGTTTTTCCTCTATCCACCAGACTGGACAGAATAGAGATGCTACTTCAATTGGAAAAGGCATGTTCTCAATAGGTGAAGGCACAAGTCAAAGAAATCTCCAAAACTTTGGCCAACACCTCAATACGCATCTTGTCGACAATTCGGTAAAGGCTGAAAGAGTTCATGATCCAAGCTCCCAGATTAATCTCTTCTCTGCGCAATATGGACAGGAGGATCTCATGAGTGAACTTCTGAAACAGCAAGGAAGCAGTGGACCAGCTGAAAATGAGTTTGATTTTGATGGATATTCCTTAGACAACATTCAGGCCTAA 2067 0.4441 MLSSSSVWISETMNLSNGKGTTTMSTPTSTSSFKSSDAVSDKFPAGLRVLVVDDDPTCLMILDRMLRACLYEVTKCTRAEVALSILRENKNGFDIVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKQVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRRRKNGWKDLEQSGSVDEGDRQIKASDDADYSSSANEGKSSKKRRDEEEDPDERDDSSTLKKPRVVWSVELHQQFMAAVNQLGLDKAVPKKILESMNVPGLTRENVASHLQKYRLYLRRLSGVSPQQNNFNNPFISPQEASFGATSVNGIDLQTLQAAGHLSAQSLAGLQAAGLGRPTAKVGVSMPLVEQRNLFSFENPKIRFGEGQLQHLSNSKPMNLLHGIPTNMEPKQLANLHQPNQSIGNLNLRVNSSTVQSKPLVMHMAQSQPRGQMISENTGSHVNRLPSSLVHPKLPNGTSNGVLEYGISGTSNITPIYSPVHQNSSMLSFPMNQSTEMAASSFPLGSTPRISSMATKGMFHEEVSSGIKGSGGFVPSYDIFDELNQHKSHDWDLTNAGLTFDASQHANTLQRTVDVSPSVLVRQSFSSIHQTGQNRDATSIGKGMFSIGEGTSQRNLQNFGQHLNTHLVDNSVKAERVHDPSSQINLFSAQYGQEDLMSELLKQQGSSGPAENEFDFDGYSLDNIQA* 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0639 688 SUPERFAMILY Homeodomain-like 222 282 IPR009057 -
Lan4g0639 688 MobiDBLite consensus disorder prediction 173 224 - -
Lan4g0639 688 PIRSF RR_ARR_type-B 22 680 IPR017053 GO:0003677|GO:0003700|GO:0009736
Lan4g0639 688 MobiDBLite consensus disorder prediction 173 190 - -
Lan4g0639 688 Pfam Myb-like DNA-binding domain 227 277 IPR001005 -
Lan4g0639 688 PANTHER TWO-COMPONENT RESPONSE REGULATOR 20 657 IPR045279 GO:0009736
Lan4g0639 688 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 224 281 IPR017930 -
Lan4g0639 688 SMART REC_2 47 159 IPR001789 GO:0000160
Lan4g0639 688 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 225 278 IPR006447 GO:0003677
Lan4g0639 688 CDD REC_typeB_ARR-like 49 163 - -
Lan4g0639 688 Pfam Response regulator receiver domain 49 157 IPR001789 GO:0000160
Lan4g0639 688 MobiDBLite consensus disorder prediction 200 224 - -
Lan4g0639 688 SUPERFAMILY CheY-like 46 167 IPR011006 -
Lan4g0639 688 PANTHER TWO-COMPONENT RESPONSE REGULATOR 20 657 - -
Lan4g0639 688 Gene3D - 222 284 - -
Lan4g0639 688 Gene3D - 47 177 - -
Lan4g0639 688 ProSiteProfiles Response regulatory domain profile. 48 163 IPR001789 GO:0000160
Lan4g0639 688 MobiDBLite consensus disorder prediction 18 37 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0639 Lan-Chr4 8724750 8728230 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0639 81 686 Response Regulator Gene Family AT3G16857 47.793 1.23e-163 482
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Lan4g0639 Response_reg 2.3e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0639 - K14491 gmx:100809583 998.038
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0639 4 8724750 8728230 Lan16g0191 16 1505645 1509624 LSH
Lan4g0639 4 8724750 8728230 Lan19g0869 19 16155703 16159677 LSH
Lan12g0881 12 15868048 15872007 Lan4g0639 4 8724750 8728230 PCT
Lan4g0639 4 8724750 8728230 Lan12g0881 12 15868048 15872007 PCT